LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre13g03579	ATGAGTGAGAAGAAAGAAATGGAGGATTTGGAAAAGAACAGTAACAATGGTGACTTTGTTGTTTCGAAGGAAGAAATTAGAGTTTTGATTGAAGCTCTTTCCAAACCTCAACTCGTTGATCTTCTCTCTCAACTAGGGTCCAATTATCCTTCAATTGCACAAGAAATACAAAGTTTTGCAAATGCTGATCGTGCCCGAACAACGAGAAATCTTTATGTTGAAAACTTATCACTACAAGTAACATATGAAATACTGTTCAACTATTTTGGGAAGCATGGTGATATAGAAGAATGTGTACTGGCACATGTACGTCAGGGTTCAAAAGTATCGAGATCTTGCTTCGTTACGTACAAGACATTGGAGGCTGCAAAGAATGCCATGAAAGACCTAGATCAAACCACTCTCGAGGGAAAAACTATAACTATAACATATGTTCCTGTAAGAGAAGCTCCAATGGCAGACTATGCTGATCCTGTCCATAGAAATATTTTTGTTCGTGACTTGTCCTTGAATACCACTTCACAAACTTTGTGTGATGCATTTAAAGAGTATGGAGAAATTGAGGATGGGAATGTGGTTGTTTATCAAGACACTCAAAAATCGCGTGGATTTGGATATATTCTTTACAAAGATGTGAAATCAGCTCAGAAAGCATTGCTTGAACCTAGCAAGTTAATCGATGGAAGATTGACTCTATGTAAGTTAGCTTGTGATGAGGGCAAATGCAAAATTAGTGATACTTTGCGGAGAAAGCTTTATATTGGAAACTTATCACCAAAAGTAACTGATGGAATGCTGTACGACTATTTTAGGAGCCATGGTGATATTGAGGATTGTTTAGTTGTATATGACAAGGATTCATATGTATCACGTGGATATGGTTTTGTTACATACAAGACAGTAGAGGCAGCAATGGAAGCCTTAAATGACCTACATCGCAAGACTTTTGAGGGAAGAAATATAATTGTGAAATATGCTAATCCTCGCAAGGGTGGAGGTGGTCAGTCGTCTGTTCCTCCAATCAGTCCAACGGAAGCCTTACCTGTGCCTCCAGGATATACATACCCTCAAACAACTGCACCATATGCTGCATCTCATTATCCAAGTTTTCTCCATGGATATCAACGACCTCCTCGGCATTACTATCGAAACCAGTGA	1158	0.3886	MSEKKEMEDLEKNSNNGDFVVSKEEIRVLIEALSKPQLVDLLSQLGSNYPSIAQEIQSFANADRARTTRNLYVENLSLQVTYEILFNYFGKHGDIEECVLAHVRQGSKVSRSCFVTYKTLEAAKNAMKDLDQTTLEGKTITITYVPVREAPMADYADPVHRNIFVRDLSLNTTSQTLCDAFKEYGEIEDGNVVVYQDTQKSRGFGYILYKDVKSAQKALLEPSKLIDGRLTLCKLACDEGKCKISDTLRRKLYIGNLSPKVTDGMLYDYFRSHGDIEDCLVVYDKDSYVSRGYGFVTYKTVEAAMEALNDLHRKTFEGRNIIVKYANPRKGGGGQSSVPPISPTEALPVPPGYTYPQTTAPYAASHYPSFLHGYQRPPRHYYRNQ	385

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre13g03579	385	SMART	rrm1_1	70	143	IPR000504	GO:0003723
	Trre13g03579	385	SMART	rrm1_1	162	234	IPR000504	GO:0003723
	Trre13g03579	385	SMART	rrm1_1	251	324	IPR000504	GO:0003723
	Trre13g03579	385	Gene3D	-	244	339	IPR012677	-
	Trre13g03579	385	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	69	147	IPR000504	GO:0003723
	Trre13g03579	385	CDD	RRM_SF	71	142	-	-
	Trre13g03579	385	Gene3D	-	51	151	IPR012677	-
	Trre13g03579	385	Gene3D	-	154	243	IPR012677	-
	Trre13g03579	385	SMART	rrm2_1	70	143	IPR003954	GO:0003676
	Trre13g03579	385	SMART	rrm2_1	162	234	IPR003954	GO:0003676
	Trre13g03579	385	SMART	rrm2_1	251	324	IPR003954	GO:0003676
	Trre13g03579	385	SUPERFAMILY	RNA-binding domain, RBD	250	334	IPR035979	GO:0003676
	Trre13g03579	385	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	250	328	IPR000504	GO:0003723
	Trre13g03579	385	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	161	238	IPR000504	GO:0003723
	Trre13g03579	385	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	71	141	IPR000504	GO:0003723
	Trre13g03579	385	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	163	228	IPR000504	GO:0003723
	Trre13g03579	385	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	252	321	IPR000504	GO:0003723
	Trre13g03579	385	SUPERFAMILY	RNA-binding domain, RBD	68	222	IPR035979	GO:0003676
	Trre13g03579	385	PANTHER	GEO13361P1-RELATED	152	238	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre13g03579	Trre-Chr13	43568256	43570686	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre13g03579	70	326	Eukaryotic Initiation Factors Gene Family	AT4G34110	27.106	2.48e-22	97.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre13g03579	K12741		-	gmx:100776344	224.172