Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03576 ATGAATCTCCAAACCAAAAACTTGCTATCTCTTTTAGTTCCAATAGCTGCAATTTTTGCATCATTGTATCTCATAAATCCAAATCCACAATTCCTAAACAACCTCACATATTTCAGTTTCACAACTTTGTCACCATCATCTATATACTTGTTCAAAGACCATCATCATAGACCACACAAAAAACACCCTGACACTAGGAATGATGGTTCTATTTGTGATGATTTTCCACCAGGAATTCCACCTCCAAACACCAATACAACTTCTTATCTTTGTGTTGATCGAAAAGGGTGTTGTAATTTCACAACTGTTCAACAAGCTGTTAATGCTGTTCCAGATTTCAGCTTAAAAAGAACCATAATATGGATTAACAGTGGCATCTACTATGAGAAAGTTATGGTTCCCAAAACCAAACCCAACATTACATTTCAAGGACAAAGCTATACTTCAACTGCAATTGCATGGAATGATACAGCAAAATCTGCTAATGGCACGTTTTATAGTGGCTCCGTACAAGTTTTTGCTTCCAATTTCATTGCTAAGAACATAAGTTTCATGAATTTAGCACCAATGCCAAGTCCTGGGGCTGAAGGAGCACAAGCAGTAGCCATGAGGATATCAGGAGATCAAGCTGAATTTAGGAGTTGTGGATTTTTTGGAGCACAAGATACCCTTCATGATGATAAGGGTCGTCATTACTTCAAAGATTGCTATATTCAAGGATCCATTGATTTCATATTTGGCAATGCAAGGTCACTTTATGAGAATTGTCAATTAGTTTCTATAGCAAATCCAGTACCACAAGGACAAAAGAACATAAACGGTGCAATTACAGCTCATGGTAGAGTTTCAATGGAAGAAAATACAGGATATGTGTTTCTAAACAGTACAATAGGAGGCAATGGTAGAATATGGTTAGGTCGAGCATGGAGACCATATTCTCGTGTTATTTTTGCATTCACAACTATGTCAGATATTATTGCCCCTGAAGGTTGGAATGATTTCAATGACCCTACAAGAGACCAGACTATATTTTATGCTGAGTACAATTGTTCTGGGCCAGGGGCTAGTGTGAATATGAGGGCCCCTTATGTACAAAGATTGAATGATACACAAGCTTTTCCATTTCTCAACACAACTTTTATTGATGGTGATCTATGGTTGGAAACTTAG 1170 0.3735 MNLQTKNLLSLLVPIAAIFASLYLINPNPQFLNNLTYFSFTTLSPSSIYLFKDHHHRPHKKHPDTRNDGSICDDFPPGIPPPNTNTTSYLCVDRKGCCNFTTVQQAVNAVPDFSLKRTIIWINSGIYYEKVMVPKTKPNITFQGQSYTSTAIAWNDTAKSANGTFYSGSVQVFASNFIAKNISFMNLAPMPSPGAEGAQAVAMRISGDQAEFRSCGFFGAQDTLHDDKGRHYFKDCYIQGSIDFIFGNARSLYENCQLVSIANPVPQGQKNINGAITAHGRVSMEENTGYVFLNSTIGGNGRIWLGRAWRPYSRVIFAFTTMSDIIAPEGWNDFNDPTRDQTIFYAEYNCSGPGASVNMRAPYVQRLNDTQAFPFLNTTFIDGDLWLET 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03576 389 Gene3D - 83 389 IPR012334 -
Trre13g03576 389 Pfam Pectinesterase 92 384 IPR000070 GO:0030599|GO:0042545
Trre13g03576 389 ProSitePatterns Pectinesterase signature 2. 238 247 IPR033131 -
Trre13g03576 389 MobiDBLite consensus disorder prediction 59 79 - -
Trre13g03576 389 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 78 388 - -
Trre13g03576 389 FunFam Pectinesterase 84 389 - -
Trre13g03576 389 SUPERFAMILY Pectin lyase-like 89 387 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03576 Trre-Chr13 43549376 43552079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03576 17 388 Carbohydrate Esterase AT1G05310 63.904 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03576 - - gmx:100806629 674.47