Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03573 ATGCAATCTTCTTCATCACCCTCTGTCCCAGGAAGCTACATCAGAAATAATAAAGATTCAGGAGCTTATGATTTGGGAGAATTGGATCAAGCACTTTTTTTGTATCTTAATGGACAAAATGACCCAACTAGTGTTCATGAACAAAAACAGAATTCATCAACATCAGGAATGAGGCCTCCAACTCTTAACATTTTCCCTTCTCAACCTATGCATGTTGAGCCATCATCATCAAATTCTAAGGCTAGCATGGAGTTAATTTCTTCGGAAACAAGTGGATCGAAGAAAGGATCAGAGGCGCCGTCTATGGAATTAACTAACTCAAGAAAAGAAATTGCTTCTGGCTCTCAGCAACCCAAACCTATCAAGCAACGAGAGAGAAATCATGGCAAGGGTCCAACTTCAAGTTCTGAACATGAAGGACCTAAAACACCAGATCCTAAGACACTGAGAAGACTTGCTCAGAATAGAGAAGCAGCTAGAAAAAGCAGGCTTAGAAAAAAGGCATATATTCAACAACTAGAGTCAAGCAGAATCAAACTTAATCAGATGGAACAAGAGCTTCAGCGTGCTAGAAATCAAGGCATGTTCTTTGGTGGAGGTGCAATTATGGGTGGTGAACAAGGTCTTCCTATTTCAATGAATGGCATTAGCTCAGAGGCTGCAATGTTTGATGTGGAATATGCAAGGTGGTTAGAGGAGCACCACCGTTTAGTGTGTGAACTAAGAGCTGCAATTCAAGAGCACATTCATGAAAATGATCTTAGAATGTTTGTGGACAAATTTTTAGCACAAATTGATCAACTAATGCATCTAAAAAGCTTAGTTGCAAAATCAGACATTTTTCATCTTGTTTCTGGTATGTGGGTTACCCCTGCTGAACGTTGCTTTATGTGGATTGGTGGATTCAAACCTTCTGAACTCATTAAGATTATTGTGAGTCAAATTGAGCCTGTAACCGAGCAACAAATAATGGGCATATATGGATTGCAACATTCAACACAACAAGGAGAAGATGCTCTCTCTCAAGGACTTGAGGCTCTTAATCAATCTCTTTCAGAAACTATAACATCAGAATCATTGAGCTATCCTCCAAACATGAATAATTACATGGATCAAATGTCTAGGGCAATGAACAAGCTCTCCACTCTTGAAGGTTTCGTAAGAGAGGCGGATAATCTACGACACCAAACCATTCACCGCTTGAATCATATCCTAACAACGCGTCAAGCAGCGAGGTGTTTTCTTGCCATTGCCGAGTACTACCATCGTCTGCGAACCTTGAGTTCTTTGTGGTTGGCACGCCCTCGTCAAGAATAG 1317 0.4055 MQSSSSPSVPGSYIRNNKDSGAYDLGELDQALFLYLNGQNDPTSVHEQKQNSSTSGMRPPTLNIFPSQPMHVEPSSSNSKASMELISSETSGSKKGSEAPSMELTNSRKEIASGSQQPKPIKQRERNHGKGPTSSSEHEGPKTPDPKTLRRLAQNREAARKSRLRKKAYIQQLESSRIKLNQMEQELQRARNQGMFFGGGAIMGGEQGLPISMNGISSEAAMFDVEYARWLEEHHRLVCELRAAIQEHIHENDLRMFVDKFLAQIDQLMHLKSLVAKSDIFHLVSGMWVTPAERCFMWIGGFKPSELIKIIVSQIEPVTEQQIMGIYGLQHSTQQGEDALSQGLEALNQSLSETITSESLSYPPNMNNYMDQMSRAMNKLSTLEGFVREADNLRHQTIHRLNHILTTRQAARCFLAIAEYYHRLRTLSSLWLARPRQE 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03573 438 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 145 189 IPR004827 GO:0003700|GO:0006355
Trre13g03573 438 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 150 165 IPR004827 GO:0003700|GO:0006355
Trre13g03573 438 Pfam Seed dormancy control 238 313 IPR025422 GO:0006351|GO:0043565
Trre13g03573 438 MobiDBLite consensus disorder prediction 1 15 - -
Trre13g03573 438 MobiDBLite consensus disorder prediction 121 149 - -
Trre13g03573 438 CDD bZIP_HBP1b-like 147 199 - -
Trre13g03573 438 MobiDBLite consensus disorder prediction 1 22 - -
Trre13g03573 438 Coils Coil 166 193 - -
Trre13g03573 438 PANTHER TRANSCRIPTION FACTOR TGA9 62 437 - -
Trre13g03573 438 Gene3D - 146 195 - -
Trre13g03573 438 Pfam bZIP transcription factor 147 183 IPR004827 GO:0003700|GO:0006355
Trre13g03573 438 MobiDBLite consensus disorder prediction 39 120 - -
Trre13g03573 438 ProSiteProfiles DOG1 domain profile. 220 434 IPR025422 GO:0006351|GO:0043565
Trre13g03573 438 FunFam BZIP family transcription factor 146 195 - -
Trre13g03573 438 MobiDBLite consensus disorder prediction 39 149 - -
Trre13g03573 438 SMART brlzneu 143 229 IPR004827 GO:0003700|GO:0006355
Trre13g03573 438 SUPERFAMILY Leucine zipper domain 148 191 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03573 Trre-Chr13 43490379 43496979 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03573 17 438 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 61.400 0.0 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre13g03573 DOG1 2.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03573 K14431 - gmx:100815176 673.7