Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03572 ATGCAATCTTCTTCATCACCCTCTGTCCCAGGAAGCTACATAAATAATAAAGATTCAGGAGCTTATGATTTGGGAGAATTGGATCAAGCACTTTTTTTGTATCTTAATGGACAAAATGACCCAACTAGTGTTCATGAACAAAAACAGAATTCATCAACATCAGGAATGAGGCCTCCAACTCTTAACATTTTCCCTTCTCAACCTATGCATGTTGAGCCATCATCATCAAATTCTAAGGCTAGCATGGAGTTAATTTCTTCGGAAACAAGTGGATCGAAGAAAGGATCAGAGGCGCCGTCTATGGAATTAACTAACTCAAGAAAAGAAATTGCTTCTGGCTCTCAGCAACCCAAACCTATCAAGCAACGAGAGAGAAATCATGGCAAGGGTCCAACTTCAAGTTCTGAACATGAAGGACCTAAAACACCAGATCCTAAGACACTGAGAAGACTTGCTCAGAATAGAGAAGCAGCTAGAAAAAGCAGGCTTAGAAAAAAGGCATATATTCAACAACTAGAGTCAAGCAGAATCAAACTTAATCAGATGGAACAAGAGCTTCAGCGTGCTAGAAATCAAGGCATGTTCTTTGGTGGAGGTGCAATTATGGGTGGTGAACAAGGTCTTCCTATTTCAATGAATGGCATTAGCTCAGAGGCTGCAATGTTTGATGTGGAATATGCAAGGTGGTTAGAGGAGCACCACCGTTTAGTGTGTGAACTAAGAGCTGCAATTCAAGAGCACATTCATGAAAATGATCTTAGAATGTTTGTGGACAAATTTTTAGCACAAATTGATCAACTAATGCATCTAAAAAGCTTAGTTGCAAAATCAGACATTTTTCATCTTGTTTCTGGTATGTGGGTTACCCCTGCTGAACGTTGCTTTATGTGGATTGGTGGATTCAAACCTTCTGAACTCATTAAGATTATTGTGAGTCAAATTGAGCCTGTAACCGAGCAACAAATAATGGGCATATATGGATTGCAACATTCAACACAACAAGGAGAAGATGCTCTCTCTCAAGGACTTGAGGCTCTTAATCAATCTCTTTCAGAAACTATAACATCAGAATCATTGAGCTATCCTCCAAACATGAATAATTACATGGATCAAATGTCTAGGGCAATGAACAAGCTCTCCACTCTTGAAGGTTTCGTAAGAGAGGCGGATAATCTACGACACCAAACCATTCACCGCTTGAATCATATCCTAACAACGCGTCAAGCAGCGAGGTGTTTTCTTGCCATTGCCGAGTACTACCATCGTCTGCGAACCTTGAGTTCTTTGTGGTTGGCACGCCCTCGTCAAGAATAG 1314 0.4049 MQSSSSPSVPGSYINNKDSGAYDLGELDQALFLYLNGQNDPTSVHEQKQNSSTSGMRPPTLNIFPSQPMHVEPSSSNSKASMELISSETSGSKKGSEAPSMELTNSRKEIASGSQQPKPIKQRERNHGKGPTSSSEHEGPKTPDPKTLRRLAQNREAARKSRLRKKAYIQQLESSRIKLNQMEQELQRARNQGMFFGGGAIMGGEQGLPISMNGISSEAAMFDVEYARWLEEHHRLVCELRAAIQEHIHENDLRMFVDKFLAQIDQLMHLKSLVAKSDIFHLVSGMWVTPAERCFMWIGGFKPSELIKIIVSQIEPVTEQQIMGIYGLQHSTQQGEDALSQGLEALNQSLSETITSESLSYPPNMNNYMDQMSRAMNKLSTLEGFVREADNLRHQTIHRLNHILTTRQAARCFLAIAEYYHRLRTLSSLWLARPRQE 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03572 437 Coils Coil 165 192 - -
Trre13g03572 437 MobiDBLite consensus disorder prediction 1 15 - -
Trre13g03572 437 PANTHER TRANSCRIPTION FACTOR TGA9 61 436 - -
Trre13g03572 437 SUPERFAMILY Leucine zipper domain 147 190 IPR046347 GO:0003700|GO:0006355
Trre13g03572 437 MobiDBLite consensus disorder prediction 38 119 - -
Trre13g03572 437 FunFam BZIP family transcription factor 145 194 - -
Trre13g03572 437 ProSiteProfiles DOG1 domain profile. 219 433 IPR025422 GO:0006351|GO:0043565
Trre13g03572 437 MobiDBLite consensus disorder prediction 120 148 - -
Trre13g03572 437 CDD bZIP_HBP1b-like 146 198 - -
Trre13g03572 437 MobiDBLite consensus disorder prediction 38 148 - -
Trre13g03572 437 Pfam bZIP transcription factor 146 182 IPR004827 GO:0003700|GO:0006355
Trre13g03572 437 Gene3D - 145 194 - -
Trre13g03572 437 MobiDBLite consensus disorder prediction 1 21 - -
Trre13g03572 437 Pfam Seed dormancy control 237 312 IPR025422 GO:0006351|GO:0043565
Trre13g03572 437 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 149 164 IPR004827 GO:0003700|GO:0006355
Trre13g03572 437 SMART brlzneu 142 228 IPR004827 GO:0003700|GO:0006355
Trre13g03572 437 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 144 188 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03572 Trre-Chr13 43490379 43496979 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03572 11 437 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 60.938 0.0 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre13g03572 DOG1 2.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03572 K14431 - gmx:100815176 678.322