Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03571 ATGGCTGCTTCAAGTGTTAAAAATCTCAACCAAACCACTACTCAATTAGAACCACTCCCACCACAACATCAACATCATCATCATTTTCATCATCAACAACATCAACAACAACATCATCAAAATAATCAAATTTCTTTTGGAATGATGCAATCTTCTTCATCACCCTCTGTCCCAGGAAGCTACATAAATAATAAAGATTCAGGAGCTTATGATTTGGGAGAATTGGATCAAGCACTTTTTTTGTATCTTAATGGACAAAATGACCCAACTAGTGTTCATGAACAAAAACAGAATTCATCAACATCAGGAATGAGGCCTCCAACTCTTAACATTTTCCCTTCTCAACCTATGCATGTTGAGCCATCATCATCAAATTCTAAGGCTAGCATGGAGTTAATTTCTTCGGAAACAAGTGGATCGAAGAAAGGATCAGAGGCGCCGTCTATGGAATTAACTAACTCAAGAAAAGAAATTGCTTCTGGCTCTCAGCAACCCAAACCTATCAAGCAACGAGAGAGAAATCATGGCAAGGGTCCAACTTCAAGTTCTGAACATGAAGGACCTAAAACACCAGATCCTAAGACACTGAGAAGACTTGCTCAGAATAGAGAAGCAGCTAGAAAAAGCAGGCTTAGAAAAAAGGCATATATTCAACAACTAGAGTCAAGCAGAATCAAACTTAATCAGATGGAACAAGAGCTTCAGCGTGCTAGAAATCAAGGCATGTTCTTTGGTGGAGGTGCAATTATGGGTGGTGAACAAGGTCTTCCTATTTCAATGAATGGCATTAGCTCAGAGGCTGCAATGTTTGATGTGGAATATGCAAGGTGGTTAGAGGAGCACCACCGTTTAGTGTGTGAACTAAGAGCTGCAATTCAAGAGCACATTCATGAAAATGATCTTAGAATGTTTGTGGACAAATTTTTAGCACAAATTGATCAACTAATGCATCTAAAAAGCTTAGTTGCAAAATCAGACATTTTTCATCTTGTTTCTGGTATGTGGGTTACCCCTGCTGAACGTTGCTTTATGTGGATTGGTGGATTCAAACCTTCTGAACTCATTAAGATTATTGTGAGTCAAATTGAGCCTGTAACCGAGCAACAAATAATGGGCATATATGGATTGCAACATTCAACACAACAAGGAGAAGATGCTCTCTCTCAAGGACTTGAGGCTCTTAATCAATCTCTTTCAGAAACTATAACATCAGAATCATTGAGCTATCCTCCAAACATGAATAATTACATGGATCAAATGTCTAGGGCAATGAACAAGCTCTCCACTCTTGAAGGTTTCGTAAGAGAGGCGGATAATCTACGACACCAAACCATTCACCGCTTGAATCATATCCTAACAACGCGTCAAGCAGCGAGGTGTTTTCTTGCCATTGCCGAGTACTACCATCGTCTGCGAACCTTGAGTTCTTTGTGGTTGGCACGCCCTCGTCAAGAATAG 1458 0.3985 MAASSVKNLNQTTTQLEPLPPQHQHHHHFHHQQHQQQHHQNNQISFGMMQSSSSPSVPGSYINNKDSGAYDLGELDQALFLYLNGQNDPTSVHEQKQNSSTSGMRPPTLNIFPSQPMHVEPSSSNSKASMELISSETSGSKKGSEAPSMELTNSRKEIASGSQQPKPIKQRERNHGKGPTSSSEHEGPKTPDPKTLRRLAQNREAARKSRLRKKAYIQQLESSRIKLNQMEQELQRARNQGMFFGGGAIMGGEQGLPISMNGISSEAAMFDVEYARWLEEHHRLVCELRAAIQEHIHENDLRMFVDKFLAQIDQLMHLKSLVAKSDIFHLVSGMWVTPAERCFMWIGGFKPSELIKIIVSQIEPVTEQQIMGIYGLQHSTQQGEDALSQGLEALNQSLSETITSESLSYPPNMNNYMDQMSRAMNKLSTLEGFVREADNLRHQTIHRLNHILTTRQAARCFLAIAEYYHRLRTLSSLWLARPRQE 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03571 485 Coils Coil 213 240 - -
Trre13g03571 485 MobiDBLite consensus disorder prediction 1 20 - -
Trre13g03571 485 MobiDBLite consensus disorder prediction 168 196 - -
Trre13g03571 485 Pfam bZIP transcription factor 194 230 IPR004827 GO:0003700|GO:0006355
Trre13g03571 485 MobiDBLite consensus disorder prediction 1 41 - -
Trre13g03571 485 FunFam BZIP family transcription factor 193 242 - -
Trre13g03571 485 Gene3D - 193 242 - -
Trre13g03571 485 ProSiteProfiles DOG1 domain profile. 267 481 IPR025422 GO:0006351|GO:0043565
Trre13g03571 485 PANTHER TRANSCRIPTION FACTOR TGA9 109 484 - -
Trre13g03571 485 SMART brlzneu 190 276 IPR004827 GO:0003700|GO:0006355
Trre13g03571 485 MobiDBLite consensus disorder prediction 87 167 - -
Trre13g03571 485 CDD bZIP_HBP1b-like 194 246 - -
Trre13g03571 485 SUPERFAMILY Leucine zipper domain 195 238 IPR046347 GO:0003700|GO:0006355
Trre13g03571 485 MobiDBLite consensus disorder prediction 87 196 - -
Trre13g03571 485 Pfam Seed dormancy control 285 360 IPR025422 GO:0006351|GO:0043565
Trre13g03571 485 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 197 212 IPR004827 GO:0003700|GO:0006355
Trre13g03571 485 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 192 236 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03571 Trre-Chr13 43490379 43497123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03571 59 485 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 60.938 0.0 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre13g03571 DOG1 3.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03571 K14431 - gmx:100815176 704.131