Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03560 ATGGTTGATTATCAAGGTTATATCTTATATTTCATCATATGGCTAATATCAACAATTTTAGTAAAAACCATACTCACAAGAAGATACAAGAAATCTAATTTACCTCCAAGTCCATTTTCCTTACCAATCATTGGACACCTTCATCTTCTTGGTTCAATACCTCATCAAGGACTTCACAAACTCTCAACAAAATATGGACCAATAATCCATCTTTTTCTTGGTTCTGTCCCTTGTGTTGTAGCTTCAACACCAGAATCAGCTAAAGAGTTTCTTAAAACACACGAAACCTATTTTTCGAACCGACCTCATAGTTCAGCTGTTGATTATCTAACATATGGTTCACAAGATTTTTCATTTGCTCCTTATGGACCATATTGGAAATTCATCAAGAAAATATGCATGTCTGAGCTTCTTGGTGGTGGCACATTGACTCAACTTTTTCCTGTGAGGAAAGAAGAGACTATAAGATTTGTCAGATTTTTGGTCAAGAAAGGGAAGGAAAATGAGGCTGTTGATGTTGCAAAAGAGCTTTTGAGGTTGTCGAATAACGTTGTTTCGAGGATGATTATGAGCCAAAGTTGTAGTGAAAATGATGGTGAGGCTGATGAGGTTAGGAAGTTGGTGCAAGACACTGCACATCTTACTGGAAAGTTTAATGTTTCTGATTTTATTTGGATTTTTAAGAACTGGGATGTGCAAGGGTTTAGCAAAAGTTTAAAGGAAATTAGGGATAGGTTTGATTCTATGATGGAGAGGATTATCAAGGAGCATCAAGAAGTAAGGAGGAGGAGAAAGGAAGTTGGTGGAGGAGATGGTCAAATTAAGGATCTACTTGATATTTTATTGGATATTCTTGAAGATGAGAGTTCTGAAATCAAATTGAAAATGGAGAACATAAAAGCCTTCATCTTGGACATATTTATTGCTGGAACAGACACTTCAGCCCTAACCATTGAATGGGCTTTGGCAGAGTTAATTAACAATCCACATATAATGGCTAAAGCAAGACAAGAAATTAATGATGTAGTTGGAAACAATAGAATAGTAGAAGAACAAGACATTGTAAACCTTCCTTACCTACAAGCAATAGTGAAAGAAACACTAAGGATTCACCCTACAGGTCCATTAATTGTTAGAGAATCATCTGAAAGGTGCATAATCCAAGGATATGAGATTCCAGCAAAGACACAATTGTTTATTAATATATGGTCTATTGGAAGGGATCCTAATTATTGGGATAATCCACTAGAGTTTAAGCCAGAGAGGTTTGTTAGTGAAGTTGGAAATTTAGATGTGAGGGGACAACATTTTCATTTGATTCCATTTGGAAGTGGAAGAAGAGGGTGTCCTGGAACATCATTGGCTTTGCATGTTGTGCAAACAAATCTTGCTGCTATGATTCAATGTTTTGAATGGAAGGTTAGTGGAGGGAAAGGAAGTGTTGATATGGAAGAGAAACCTGGGTTGACTCTTTCAAGGGCTCATCCTTTAATTTGTGTTCCTGTGCCTAGGCTTAATCCTTTTCCTTCCATGTGA 1536 0.3672 MVDYQGYILYFIIWLISTILVKTILTRRYKKSNLPPSPFSLPIIGHLHLLGSIPHQGLHKLSTKYGPIIHLFLGSVPCVVASTPESAKEFLKTHETYFSNRPHSSAVDYLTYGSQDFSFAPYGPYWKFIKKICMSELLGGGTLTQLFPVRKEETIRFVRFLVKKGKENEAVDVAKELLRLSNNVVSRMIMSQSCSENDGEADEVRKLVQDTAHLTGKFNVSDFIWIFKNWDVQGFSKSLKEIRDRFDSMMERIIKEHQEVRRRRKEVGGGDGQIKDLLDILLDILEDESSEIKLKMENIKAFILDIFIAGTDTSALTIEWALAELINNPHIMAKARQEINDVVGNNRIVEEQDIVNLPYLQAIVKETLRIHPTGPLIVRESSERCIIQGYEIPAKTQLFINIWSIGRDPNYWDNPLEFKPERFVSEVGNLDVRGQHFHLIPFGSGRRGCPGTSLALHVVQTNLAAMIQCFEWKVSGGKGSVDMEEKPGLTLSRAHPLICVPVPRLNPFPSM 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03560 511 CDD CYP93 66 501 - -
Trre13g03560 511 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 442 451 IPR017972 GO:0005506|GO:0016705
Trre13g03560 511 SUPERFAMILY Cytochrome P450 35 504 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g03560 511 Coils Coil 332 352 - -
Trre13g03560 511 Gene3D Cytochrome P450 25 499 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g03560 511 PRINTS P450 superfamily signature 309 326 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g03560 511 PRINTS P450 superfamily signature 362 373 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g03560 511 PRINTS P450 superfamily signature 449 460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g03560 511 PRINTS P450 superfamily signature 440 449 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g03560 511 Pfam Cytochrome P450 35 496 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g03560 511 PRINTS E-class P450 group I signature 439 449 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g03560 511 PRINTS E-class P450 group I signature 180 198 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g03560 511 PRINTS E-class P450 group I signature 298 315 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g03560 511 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g03560 511 PRINTS E-class P450 group I signature 318 344 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g03560 511 PRINTS E-class P450 group I signature 401 425 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g03560 511 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g03560 511 PRINTS E-class P450 group I signature 361 379 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g03560 511 PRINTS E-class P450 group I signature 449 472 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g03560 511 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 10 498 - -
Trre13g03560 511 FunFam Cytochrome P450 family protein 26 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03560 Trre-Chr13 43379019 43381153 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03560 1 504 Cytochrome P450 AT5G06900 49.407 2.95e-180 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03560 K24188 - gmx:100779342 788.875