Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03559 ATGGATTTCGTGTCTTTTCCATTTTCAAGGGGAAATAAGAATGCTGCAAGCGGAGATAATTCAGAAGAAACTGGAGCTGCAGGTCAAGGAACAAGTGAAGGAGGGAAAAGGGCTTTGTATCATTGTAACTATTGTAACAAAGATATTACGGGAAAGATCTGTATTAAGTGTGCTGTCTGTCCAGATTTTGACTTATGCATAGAGTGCTTTTCTGTTGGAGCTGAGGTGCAACCCCACAAAAGCAAGCATCCTTACAGGGTCATGGACAATTTGTTTTTCCCTCTGATCAGCGCAGACTGGAATGCAGATGATGAAATTTTGCTTCTAGAGGGAATTGAAAGGTATGTCATGGGAAACTGGGAAGAAGTCTCTAAGCATGTTGGAACAAAGGACAAAGAAAAATGCATTGAACACTATTGGAATGTGTACTTAAACTCTCCGGTCTTTCCTCTTCCGGACATGTCTCATGTTGTTGGGAAAAACAAGAAAGAACTTCTTCCCATGGCGAAAGGGCAGGGCGAGGACAAGGACAAGAAAGGGCTTTCAACGAGGGATCATAGCATAAATAAGGAAGAATCACCCTTTTCTCCAGCTACAGTCAAAATTGAAGATTCCCATAAAACTGGTTCCTCCAGCCGTTTGACTTCCAATTTGAATTCAGAGACATATTTTGGACCCTCAGTCAACACAAATGCTACAACTGCTGCATTTGGCGAACATGGGAAGTTAGATAACAAGGAAAGCAATGCAGGTGGTGGGAGAAGCCGTATGAAAACTGGTCATAATGATGATGAGGAAGGCCCTTCCTCAAATAAAGGAGAGGAAGATGGGGATGTAGATAGAAAGAAAAGACTTGGACTAATTTAA 867 0.4187 MDFVSFPFSRGNKNAASGDNSEETGAAGQGTSEGGKRALYHCNYCNKDITGKICIKCAVCPDFDLCIECFSVGAEVQPHKSKHPYRVMDNLFFPLISADWNADDEILLLEGIERYVMGNWEEVSKHVGTKDKEKCIEHYWNVYLNSPVFPLPDMSHVVGKNKKELLPMAKGQGEDKDKKGLSTRDHSINKEESPFSPATVKIEDSHKTGSSSRLTSNLNSETYFGPSVNTNATTAAFGEHGKLDNKESNAGGGRSRMKTGHNDDEEGPSSNKGEEDGDVDRKKRLGLI 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03559 288 SUPERFAMILY RING/U-box 40 103 - -
Trre13g03559 288 SUPERFAMILY Homeodomain-like 94 146 IPR009057 -
Trre13g03559 288 CDD SANT 100 142 IPR001005 -
Trre13g03559 288 SMART sant 96 145 IPR001005 -
Trre13g03559 288 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 40 221 - -
Trre13g03559 288 MobiDBLite consensus disorder prediction 167 191 - -
Trre13g03559 288 MobiDBLite consensus disorder prediction 167 288 - -
Trre13g03559 288 ProSiteProfiles Myb-like domain profile. 100 143 IPR001005 -
Trre13g03559 288 Gene3D - 33 88 IPR043145 -
Trre13g03559 288 ProSitePatterns Zinc finger ZZ-type signature. 42 69 IPR000433 GO:0008270
Trre13g03559 288 Gene3D - 94 145 - -
Trre13g03559 288 ProSiteProfiles Zinc finger ZZ-type profile. 37 93 IPR000433 GO:0008270
Trre13g03559 288 SMART zz_5 36 80 IPR000433 GO:0008270
Trre13g03559 288 MobiDBLite consensus disorder prediction 203 236 - -
Trre13g03559 288 MobiDBLite consensus disorder prediction 240 288 - -
Trre13g03559 288 MobiDBLite consensus disorder prediction 1 33 - -
Trre13g03559 288 CDD ZZ_ADA2 40 88 IPR041983 -
Trre13g03559 288 ProSiteProfiles SANT domain profile. 95 147 IPR017884 -
Trre13g03559 288 MobiDBLite consensus disorder prediction 10 28 - -
Trre13g03559 288 FunFam Transcriptional adapter 33 88 - -
Trre13g03559 288 Pfam Zinc finger, ZZ type 39 80 IPR000433 GO:0008270
Trre13g03559 288 Pfam Myb-like DNA-binding domain 100 141 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03559 Trre-Chr13 43350023 43350889 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03559 9 170 EF-hand Containing Proteins AT3G07740 51.479 7.49e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre13g03559 Myb_DNA-binding 8.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03559 K11314 - gmx:100815514 343.584