Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03558 ATGTCTTCTGCAGCTGCTTTTAATGTTTACTTGTACATCTTCTCCTTTTTAGCTTTGCTAATTTTCAATTTAATTGTCAAGAACAAACAACCCAAAAATTGTAGCTCCAAATTTAGACCCCCACCAAGCCCAAAATCATTACCCATCATAGGCCACCTTCACCTTATAGGCTCAATCATGCCAAAATCATTCCAAAAAATTTCTCAACAATATGGCCCACTAATTCAGCTCAATCTAGGTGCCTCAACTTCAATAGTTGTTTCCAATGCACAAGTAGCCAAAGAAGTCATGAAAACACATGACCTTAATTTTTGTTACCGACACCAATTTGGTTCCTCTAATGATTTTTTATACAAAGGGTCTTATTTCATTACTGCCCCATATGGTCCTTATTGGAGATTCATGAAAAAATTATGCGTTACAAAATTACTATCTAGCTCACAACTTGGTCGTTTCATGCATATTAGAGAACAAGAGTTAGAAAATCTCTTGAAATATCTTGTGATGTGTTCTAATGAAAATAAGTCAACGGATTTGTGTTTGGATTTGACTACTTATACCAATAATATTTTGTGTCGTATGACAATGGGAACCACTATATTTGACAAAGATATTATTCGATGTTTGGTTAAGGAGTTTATGCATGTAGGAGCTAAATTGAGTATGGGTGAAGTGTTTGGGCCTTTGGGAAAGTTGGATTTGTTTGGTTATGGAAAAAAGCTTAGGAAAATAGTTGGTGAATTTGATAAAATTTTGGAAAGTTTCTTGAAGGAACATGAAGAGAGAATAAATAATGAGAATTGTGAAGGAGACATGATGGATATCCTATTAGAAGTTTATAGAAATCCAAATGCTGAAGTGAGGTTAACAAGGAATGATATCAAGGCCTTCTTCCTAGACATTTTACTAGCTGGAACAGACACATCCTCAGTAGCAATGCAATGGGCCATGGCAGAGATTATAAACAACCCAATAATATTAAATAAATTAAGGGCTGAGATTGAATCTGTAGTGGGACCTACAAGATTAATTAGAGAATCAGACGTACCAAAAATGCCTTACTTACAAGCATGTGTGAAAGAAGTGCTAAGACTCCATCCACCTGCACCCTTTGCTCTAAGACAATCATCAGATGAGGATTGCAAAATCAACGGCTACGATGTAAAGGCTCATACAAGGACACTAATCAATGTCTATGCAATTATGCGGGACCCACAATCATGGGTCAACCCTGAGGAGTATATACCTGAGAGATTCTTAGTAAGTGGTGATGAAATCAACGGTGTAGATGATGTGAATAAAATGGACGGTGGTGATGATTTTAGGTATATTCCATTTGGATTTGGTCGGAGGGGTTGTCCTGGTTCATCACTTGCATTAACGGTTATACATGTGACAATTGGTGCGTTGATTCAATGTTCTGAGTGGAAAATTAACGGTTGTGATAAGGTTAATATGGAAGAAGGGTCATCATTTTCTGTAGGATTGGCTCAACCGTTAGTTTGTTACCCTGTTACTTGTTTTAACCCTTTTGAAGAAGTTTGTGATTAG 1551 0.3656 MSSAAAFNVYLYIFSFLALLIFNLIVKNKQPKNCSSKFRPPPSPKSLPIIGHLHLIGSIMPKSFQKISQQYGPLIQLNLGASTSIVVSNAQVAKEVMKTHDLNFCYRHQFGSSNDFLYKGSYFITAPYGPYWRFMKKLCVTKLLSSSQLGRFMHIREQELENLLKYLVMCSNENKSTDLCLDLTTYTNNILCRMTMGTTIFDKDIIRCLVKEFMHVGAKLSMGEVFGPLGKLDLFGYGKKLRKIVGEFDKILESFLKEHEERINNENCEGDMMDILLEVYRNPNAEVRLTRNDIKAFFLDILLAGTDTSSVAMQWAMAEIINNPIILNKLRAEIESVVGPTRLIRESDVPKMPYLQACVKEVLRLHPPAPFALRQSSDEDCKINGYDVKAHTRTLINVYAIMRDPQSWVNPEEYIPERFLVSGDEINGVDDVNKMDGGDDFRYIPFGFGRRGCPGSSLALTVIHVTIGALIQCSEWKINGCDKVNMEEGSSFSVGLAQPLVCYPVTCFNPFEEVCD 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03558 516 Gene3D Cytochrome P450 25 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g03558 516 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 15 494 - -
Trre13g03558 516 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 446 455 IPR017972 GO:0005506|GO:0016705
Trre13g03558 516 FunFam Cytochrome P450 family protein 32 502 - -
Trre13g03558 516 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g03558 516 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g03558 516 PRINTS E-class P450 group I signature 92 113 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g03558 516 PRINTS E-class P450 group I signature 356 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g03558 516 PRINTS E-class P450 group I signature 397 421 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g03558 516 PRINTS E-class P450 group I signature 453 476 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g03558 516 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g03558 516 PRINTS E-class P450 group I signature 186 204 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g03558 516 SUPERFAMILY Cytochrome P450 41 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g03558 516 Pfam Cytochrome P450 41 494 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g03558 516 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g03558 516 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g03558 516 PRINTS P450 superfamily signature 453 464 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g03558 516 PRINTS P450 superfamily signature 444 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03558 Trre-Chr13 43342614 43345568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03558 14 511 Cytochrome P450 AT2G42250 47.515 1.44e-165 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03558 - - cam:101497927 743.421