Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03540 ATGAAGAAGAAAATGAAAGTGATAAAATTTGAACATCTTTCAAATTTTAAGAATGATTTTATTATTAAGTCGAAGGTACGAACTTTTTCTTGTAAGTTTTGCAAGAAACAATTTGCTTCTCCACATTCATTAGGTGGACACCAGAATGCTCAAAAGAAAGAGCGTGCTCATGAAAAGCATCTTCAGGGAATTAAGAATAATTTTGAAACCCCTCGTTATCCTTTTCCTTACTATAATTGTCCTAGTCAATCTGCACCCCCTCCTTTTTCTTACTATAATTTTCCTAATATATCTACACCTCTTCCTTTTTCTTGCTATAATTCTCCTAGTGTATCTACACCCCTGTATCATGGATATGGATCCTATACTAGAGAACTTGAAATTAAGTTGGAGGCCATCACTCTAGGGCCTACTCCTATGTGGACACCAAAGCAAGAGATGAAAAACTTTTCTTCTAGTGGTGAAATGAAGATTGAGGATCTTAATGCAAATAATGGATACAGTGCAACTCAAACTTGGAGCAATATGAATGTTGTTGGTGAGTGTTCAACAAGCTATGCAAGTTCGAGTTACACTGTATCCATTATTTGCATTAAGATCCTCGATCTTCACTTCATCACTAGAAGACAAGTTTTTCATCTCTTGCTTTGGTGTCCACATAGGAGTAGGCCCTAG 675 0.3615 MKKKMKVIKFEHLSNFKNDFIIKSKVRTFSCKFCKKQFASPHSLGGHQNAQKKERAHEKHLQGIKNNFETPRYPFPYYNCPSQSAPPPFSYYNFPNISTPLPFSCYNSPSVSTPLYHGYGSYTRELEIKLEAITLGPTPMWTPKQEMKNFSSSGEMKIEDLNANNGYSATQTWSNMNVVGECSTSYASSSYTVSIICIKILDLHFITRRQVFHLLLWCPHRSRP 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03540 224 ProSiteProfiles Zinc finger C2H2 type domain profile. 29 56 IPR013087 -
Trre13g03540 224 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 20 169 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03540 Trre-Chr13 43177290 43177964 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03540 23 68 C2H2 Transcription Factor Family AT5G01860 47.826 2.33e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre13g03540 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03540 - - tpra:123896691 153.295