Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03529 ATGGATTTGAATTCGCGTTATCAACAACAACTCCAACAAAACGAACCAAATTCGAGGTTGCTTCGTTTTCGCTCTGCGACTAGTTCAGATCATATTCGATCAAATTTTAAACAAGGTGGTGAAGGTTGCACTGACACCAATAGTGAACCTGCAGAGAGGTTAGTTTTGAGATTCAACAATTCTGGTGAGACTTCATCGGGTAGTTTTCGACAATTCATGGATCATAATCCTTCTAATCATAGTAGTTCTAATGCAAGTTCAAGCATGATGGTTGGTTCTTATATGGGAATGGATCAACCTAATAGGACTACTTCCCCTGCTGGCCATTTCTCCAACAACATCATCTCCTTTCAAAATGGGTATGACACTATGAAAGGTGTTGAAAACTATGATGGGGTGAATGACAGTGATGGTGAACTTACTCTATCTATGAACATATTAAAAAATCAAATTGGCTTCTCACCCAAAAGGCATTCTTCCTTGGGAAGGTTATCACACAACTCGAAAACGGGTAGCGATGGGATTGGGACAACTCGCCGTGATGATGGAAGACAAGAAGATGGCAACGATGATGCTCAATATTGTGGTCATAAATTTGTTTATGATTCTAATGATCAGAATATAGAGGTAGGAAATCATGTTGGTAAACTATCACATCACTTGAGTTTGCCAAGAAAATCATCAGAGATGTTTGTTGTGGAGAATTTGCTTCAGTTCCCAGATTCTGTACCAAGTAGTATCAGAGCTAAGAGAGGCTTTGCAACACATCCTAGAAGTGTCGCTGAAAGGATAAGAAGAACGCGGATAAGTGAACGAATAAGAAAGTTGCAAGAGCTTGTTCCTAACATTGACAAGCAAACTTGCACATCAGACATGTTGGAGTTGGCTGTAGAGTACATTAATGATCTTCAAAAAGAATTAAAGATTCTGACTGCAAAAAGAGCTAAATGCAGATGCAGAAATCAGAAATGA 972 0.3899 MDLNSRYQQQLQQNEPNSRLLRFRSATSSDHIRSNFKQGGEGCTDTNSEPAERLVLRFNNSGETSSGSFRQFMDHNPSNHSSSNASSSMMVGSYMGMDQPNRTTSPAGHFSNNIISFQNGYDTMKGVENYDGVNDSDGELTLSMNILKNQIGFSPKRHSSLGRLSHNSKTGSDGIGTTRRDDGRQEDGNDDAQYCGHKFVYDSNDQNIEVGNHVGKLSHHLSLPRKSSEMFVVENLLQFPDSVPSSIRAKRGFATHPRSVAERIRRTRISERIRKLQELVPNIDKQTCTSDMLELAVEYINDLQKELKILTAKRAKCRCRNQK 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03529 323 FunFam Transcription factor bHLH130 family 254 322 - -
Trre13g03529 323 MobiDBLite consensus disorder prediction 29 45 - -
Trre13g03529 323 Coils Coil 293 320 - -
Trre13g03529 323 CDD bHLH_AtbHLH_like 258 310 IPR045239 -
Trre13g03529 323 MobiDBLite consensus disorder prediction 29 48 - -
Trre13g03529 323 SMART finulus 259 309 IPR011598 GO:0046983
Trre13g03529 323 Pfam Helix-loop-helix DNA-binding domain 259 304 IPR011598 GO:0046983
Trre13g03529 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 253 303 IPR011598 GO:0046983
Trre13g03529 323 Gene3D - 255 323 IPR036638 GO:0046983
Trre13g03529 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 256 320 IPR036638 GO:0046983
Trre13g03529 323 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 76 317 - -
Trre13g03529 323 MobiDBLite consensus disorder prediction 155 174 - -
Trre13g03529 323 MobiDBLite consensus disorder prediction 155 191 - -
Trre13g03529 323 MobiDBLite consensus disorder prediction 175 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03529 Trre-Chr13 43090271 43092438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03529 102 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 45.946 2.38e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre13g03529 HLH 4.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03529 - - tpra:123888389 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03529 13 43090271 43092438 Trre13g03529 13 43090271 43092438 ECH
Trre13g03529 13 43090271 43092438 Trre1g06427 1 67229868 67231994 ECH
Trre13g03529 13 43090271 43092438 Trre1g02104 1 16779881 16783027 PCT