Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03527 ATGGAACAACATACTGGATCCATTCACGCACTCGATTCAGTGCAATTTAATGAAGAAATTCAAGGAATTATGGTTCCGGCACCGGCACCGGAAAACGCAAGCTCATTCACGGCACTGCTTGAGCTTCCGCCGACGCAAGCCGTAGAGCTACTTCACTTACCGGATTGTGACAGAACCGACTCCCGGAAACTATCTTGCTGCCACGTCAGCGTGAATCAGAAACCTTATCTTCCGAATTCTTCCAACGGTAATTTAACTTTTCCTACAAACTCCGCGTTAATTGAACGTGCCGCGAAATTTTCAGTGTTTGCCGGAGAGAATACTTCACCGGGAGAGGTGCGGTTGTTTCCGGCTGTGTCTGGACCGAATTTAGAAAGTGTGAAGAACGAACCACAAGAGACGGATTCGAATCCTTGTTCGACGCAAGAGTGCGTTTCGGATCCAGCTGTTGAGAATAAAAATCAGAGAAACGTGAAGAGAAAAGAGCGGGAGAAGAAGGTAAAACCTTCGTCAAAGAAGAGCAAGAGCGTCGCAAATGAAACCTCCGGTGACGGTGAGAAGCTTCCCTACGTCCATGTTCGCGTTCGACGGGGTCAAGCTACAGATAGCCATAGTTTAGCAGAACGAGCTAGGAGAGAGAAGATTAATGCTCGCATGAAGCTTTTACAAGAGCTGGTCCCAGGCTGCGACGAGATATCTGGAACAGCATTGGTTCTGGATGAAATCATCAACCATGTTCAAACTCTACAACGTCAAGTGGAGATCTTATCAATGAAACTGGCAGCAGTTAACCCAAGAATTGATTTCAACTTAGACAGGTTATTGGCCTCTGATGGGTCATCTTTAATGGACAGTAGTTTACCTAGCATGGTTGCACCTCTCGTGTGGCCAGAAATCCCACTCAACAATAACAGATTGCATTATCAACAGCAATGGCAATTCGATGCATTCCATCAACCACTTTGGGGAAGAGAAGAAGACAACCATCATTTCATGACTCCGGAAAACTCACTTTTGAGTTATGACTCCTCAGCAAATTCAGCATCTCTGCACTCAAATCAATTGAAGATGGAGCTCTGA 1080 0.4583 MEQHTGSIHALDSVQFNEEIQGIMVPAPAPENASSFTALLELPPTQAVELLHLPDCDRTDSRKLSCCHVSVNQKPYLPNSSNGNLTFPTNSALIERAAKFSVFAGENTSPGEVRLFPAVSGPNLESVKNEPQETDSNPCSTQECVSDPAVENKNQRNVKRKEREKKVKPSSKKSKSVANETSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDEISGTALVLDEIINHVQTLQRQVEILSMKLAAVNPRIDFNLDRLLASDGSSLMDSSLPSMVAPLVWPEIPLNNNRLHYQQQWQFDAFHQPLWGREEDNHHFMTPENSLLSYDSSANSASLHSNQLKMEL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03527 359 MobiDBLite consensus disorder prediction 125 152 - -
Trre13g03527 359 Pfam Helix-loop-helix DNA-binding domain 203 250 IPR011598 GO:0046983
Trre13g03527 359 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 268 IPR036638 GO:0046983
Trre13g03527 359 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 199 249 IPR011598 GO:0046983
Trre13g03527 359 FunFam transcription factor bHLH48-like isoform X1 196 268 - -
Trre13g03527 359 CDD bHLH_AtBPE_like 189 274 - -
Trre13g03527 359 SMART finulus 205 255 IPR011598 GO:0046983
Trre13g03527 359 MobiDBLite consensus disorder prediction 122 188 - -
Trre13g03527 359 Coils Coil 239 259 - -
Trre13g03527 359 Gene3D - 196 269 IPR036638 GO:0046983
Trre13g03527 359 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 101 343 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03527 Trre-Chr13 43035345 43052443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03527 10 359 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 53.908 1.56e-108 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre13g03527 HLH 3.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03527 - - vun:114168708 540.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03527 13 43035345 43052443 Trre13g03527 13 43035345 43052443 ECH
Trre13g03527 13 43035345 43052443 Trre1g02099 1 16735797 16741775 PCT