Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03512 ATGTCTACATTTTGTACATACCTGTTCTTTCTTTCCTTAACCTTTTCAATCTTCAACCTCACTTCATCATCATCTTCATCAGAATTTCAAACCCTTCTTTCTTTCAAATCCACCATTCAAGACACCAAAAACACTTTATCAACTTGGTCAAACACTTCACAAACCCATTTCTGTAACTGGACTGGTATCTCTTGTTCTTCTTCTTCTTCATCTTCTTCACTCTCAGTAACCTCTGTTAACCTTCAAAGCTTAAACCTTTCTGGTGATATCTCTTCTTCCATTTGTGACCTTCCAAATCTCTTTGATCTTAATCTTGCTAATAATGTTTTCAACCAACCTATTCCTCTTCATCTTTCTCAATGTAGTTCATTGAAAAGTTTGAATCTTAGTAATAATCTTATTTGGGGTACTATCCCTTCTCAGATTTCACTTTTTGTTTCATTATCTGTGCTTGATTTGAGTAGAAATCATATAGAAGGTAATGTTCCAGATAGTTTAGGTTCATTGAAGAATCTTCAAGTGCTTAATATGGCTAATAATTTACTTTCTGGTGATGTACCTAAGGTGTTTGATAATTTGACTAAGTTACAAGTTCTTGATTTATCTGAAAATCCTTACTTGGTCAGTGAGATTCCTGAGGATATTGGTCAGCTTAGGAATCTAAAACAACTTTTTTTGCAGAGTTCTTCTTTTCAAGGTGAAATTCCTGAGTCTTTGAAGGGTTTGACTAGTTTAAGTTATTTAGATCTCTCTATGAATAATCTAACTGGTGAGGTTCCTAAGACACTTGTGAGTTCTCTTAAGAATCTTGTTTCTTTTGATGTTTCACAAAACAAGCTTAAAGGGTCATTTCCAAATGGTTTATGTAATGGAAAAGTGCTTATAAATTTAAGTCTTCACACAAATAGTTTCACTGGTTCAATACCAAACACAACTAGTGAGTGTAAGAGTCTTGAGAGATTTCAAGTTCAGAACAATGGTTTCTCTGGTGATTTTCCTGTTGTTTTATTTTCACTTCCTAAAATTAAGCTTATTAGAGGTGAAAACAATAGATTCACAGGACAAATACCTGAGTCAATCTCAGAAGCTGTTCAGTTAGAGCAAGTTCAGCTTGATAATAATCTTTTTTATGGTAAAATTCCTTCAGGTCTTGGTTTTGTTAAAAGTTTATATAGATTTTCTGCTTCTCTTAATCATTTCTATGGTGAAATTCCTCCTAATTTTTGTGACTCACCAGTTATGAGTATAGTGAATCTCTCTCACAATTCTCTTTCTGGTCATATACCTCAGCTGAAAAAATGCAGGAAACTAGTTTCACTTTCTTTAGCTGATAACAGTTTCACAGGAGAAATTCCTTCTTCTCTAGCTGAGTTACCTGTGCTTACTTACCTTGATCTTTCAGATAACAATCTCACTGGTTCAATTCCATTAGGGCTTCAAAACTTGAAGCTTGCTCTTTTCAATGTTTCCTTTAATCAGTTATCAGGTAAAGTACCATACTCTTTGATATCTGGTCTTCCTGCATCATTTTTGGAAGGTAATCCTTCTCTTTGTGGTCCCGGATTGCCGAATTCATGTTCTGATGACAAGCCAAGACACCGTTCTGCTTCTGGTCTTACAACCTTGACATGTGCTTTGATCTCTCTAGCATTTGTTGCTGGAACTGCTCTTGTTGCTGGTGGATTTATATTTTATAGGAGATCTTTTAAAGAGAGTGAAGTCGCCGTGTGGCGTTCGGTGTTTTTCTATCCTCTGAGAATTACTGAGCATGATCTTGTTATAGGGATGAATGAGAAAAGCTCAATAGGAAATGGTGTTTTTGGTAATGTTTATGTTGTGAGCTTACCTAGTGGTGATTTAGTATCTGTGAAGAAGTTGGTTAAATTTGGAAACCAGTCTTCAAAGAGTTTGAAAGTTGAGGTCAAAACTTTGGCTAAAATTAGGCATAAGAATATTGTTAAGATTCTTGGGTTTTGCCATTCTGATGAGTCAGTTTTTCTCATTTATGAATACTTGCATGGTGGAAGCTTAGGAGACTTGATTTCTAGTCAGAATTTTGAGTTGCATTGGGGAGTTAGATTAAGGATTGCTATTGGAGTTGCTCAAGGACTTGCATATCTTCACAAGGATTATGTACCACACTTGGTTCATAGAAATGTCAAGTCAAAGAACATTCTGTTGGATGTTAACTTTGAGCCAAAACTTACACATTTTGCTCTTGATAGGATTGTTGGAGAAGCTGCATTTCAATCAACTTTGGATTCTGAAGCTGCATCTTCTTGTTACATTGCTCCAGAATATGGTTACAACAAAAAAGCAAGTGAACAATTGGATGTGTACAGCTTTGGTGTTGTATTACTAGAGCTAGTTTGTGGAAGACAAGCAGAACAAACAGATTCAAGTGACTCTTCTTCACTTGACATAGTGAAATGGGTTAGAAGGAAAGTGAACATTACTAATGGGGTGCACCAAGTTCTTGACACTAAAATATCACAAACTTGTCACCAAGAAATGGTTGGTGCTTTAGATATTGCTCTACGTTGCACTTCTGTGGTACCTGAAAAAAGGCCATCAATGTTAGATGTTATTAGAGGTCTTCAGTCTCTTGAGTCAAGGAAATGTGTTGCAAATTTGCAGGGTCCAAATGATGAACCCTCCATTCCTGTTTGA 2670 0.3577 MSTFCTYLFFLSLTFSIFNLTSSSSSSEFQTLLSFKSTIQDTKNTLSTWSNTSQTHFCNWTGISCSSSSSSSSLSVTSVNLQSLNLSGDISSSICDLPNLFDLNLANNVFNQPIPLHLSQCSSLKSLNLSNNLIWGTIPSQISLFVSLSVLDLSRNHIEGNVPDSLGSLKNLQVLNMANNLLSGDVPKVFDNLTKLQVLDLSENPYLVSEIPEDIGQLRNLKQLFLQSSSFQGEIPESLKGLTSLSYLDLSMNNLTGEVPKTLVSSLKNLVSFDVSQNKLKGSFPNGLCNGKVLINLSLHTNSFTGSIPNTTSECKSLERFQVQNNGFSGDFPVVLFSLPKIKLIRGENNRFTGQIPESISEAVQLEQVQLDNNLFYGKIPSGLGFVKSLYRFSASLNHFYGEIPPNFCDSPVMSIVNLSHNSLSGHIPQLKKCRKLVSLSLADNSFTGEIPSSLAELPVLTYLDLSDNNLTGSIPLGLQNLKLALFNVSFNQLSGKVPYSLISGLPASFLEGNPSLCGPGLPNSCSDDKPRHRSASGLTTLTCALISLAFVAGTALVAGGFIFYRRSFKESEVAVWRSVFFYPLRITEHDLVIGMNEKSSIGNGVFGNVYVVSLPSGDLVSVKKLVKFGNQSSKSLKVEVKTLAKIRHKNIVKILGFCHSDESVFLIYEYLHGGSLGDLISSQNFELHWGVRLRIAIGVAQGLAYLHKDYVPHLVHRNVKSKNILLDVNFEPKLTHFALDRIVGEAAFQSTLDSEAASSCYIAPEYGYNKKASEQLDVYSFGVVLLELVCGRQAEQTDSSDSSSLDIVKWVRRKVNITNGVHQVLDTKISQTCHQEMVGALDIALRCTSVVPEKRPSMLDVIRGLQSLESRKCVANLQGPNDEPSIPV 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03512 889 FunFam probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 587 671 - -
Trre13g03512 889 Gene3D Ribonuclease Inhibitor 267 535 IPR032675 -
Trre13g03512 889 ProSiteProfiles Protein kinase domain profile. 596 869 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g03512 889 Pfam Protein kinase domain 597 862 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g03512 889 ProSiteProfiles Leucine-rich repeat profile. 460 483 IPR001611 GO:0005515
Trre13g03512 889 PANTHER LEUCINE RICH REPEAT KINASE 2 169 872 - -
Trre13g03512 889 SUPERFAMILY Protein kinase-like (PK-like) 598 864 IPR011009 -
Trre13g03512 889 Gene3D Ribonuclease Inhibitor 25 188 IPR032675 -
Trre13g03512 889 SUPERFAMILY L domain-like 207 524 - -
Trre13g03512 889 ProSiteProfiles Leucine-rich repeat profile. 123 145 IPR001611 GO:0005515
Trre13g03512 889 Pfam Leucine Rich repeat 460 473 IPR001611 GO:0005515
Trre13g03512 889 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 672 874 - -
Trre13g03512 889 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 266 529 - -
Trre13g03512 889 Pfam Leucine rich repeat 219 280 IPR001611 GO:0005515
Trre13g03512 889 Pfam Leucine rich repeat 147 204 IPR001611 GO:0005515
Trre13g03512 889 Gene3D Transferase(Phosphotransferase) domain 1 672 881 - -
Trre13g03512 889 ProSitePatterns Protein kinases ATP-binding region signature. 602 625 IPR017441 GO:0005524
Trre13g03512 889 Gene3D Phosphorylase Kinase; domain 1 590 671 - -
Trre13g03512 889 SUPERFAMILY L domain-like 24 261 - -
Trre13g03512 889 FunFam Leucine-rich repeat family protein 27 187 - -
Trre13g03512 889 Gene3D Ribonuclease Inhibitor 189 266 IPR032675 -
Trre13g03512 889 SMART LRR_typ_2 97 121 IPR003591 -
Trre13g03512 889 SMART LRR_typ_2 458 481 IPR003591 -
Trre13g03512 889 SMART LRR_typ_2 145 168 IPR003591 -
Trre13g03512 889 SMART LRR_typ_2 267 291 IPR003591 -
Trre13g03512 889 SMART LRR_typ_2 169 192 IPR003591 -
Trre13g03512 889 SMART LRR_typ_2 193 218 IPR003591 -
Trre13g03512 889 SMART LRR_typ_2 242 266 IPR003591 -
Trre13g03512 889 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03512 Trre-Chr13 42826620 42829656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03512 28 869 Receptor kinase-like Gene Family AT5G06940 62.367 0.0 1029
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre13g03512 Pkinase 3.8e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03512 - - gmx:100794428 1374.38