Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03511 ATGGAGTCTCATGATGAGATGGGATGCCAGGCACCAGAACGTCCAATTCTTTGCGTTAATAATTGTGGTTTCTTCGGAAGGGCAGCTACCATGAACATGTGTTCTAAGTGTTACAAGGACACATTGTTGAAGCAGGAGCAAGACAAACTTGCAGCGACATCAGTTGAAAACATTGTGAACGGCAATTCCAGTGGCAACGGAAAGCTGGCCGTGACTACAGCTGCTGTCGATGTACAAGTTGGAACTGTTGAGGTCAATACAGCGTGTCCTGAGGTTCCCGAAAATTCAATCTTTGCTGAAAGTGTGGAGGTGAAAGCCAAGACTGGTCCCAGCAGATGTACTACTTGCCGGAAACGTGTCGGATTAACTGGTTTCAGCTGCAAATGTGGCAACCTCTTTTGTTCAATGCATCGCTATTCTGATAAACATGATTGCCCTTTCGATTATAGAACTGATGGTCAGAAAGCCATTGCTGAAGCCAACCCAGTAATTAAGGCTGATAAACTTGATAAAATATAG 519 0.4451 MESHDEMGCQAPERPILCVNNCGFFGRAATMNMCSKCYKDTLLKQEQDKLAATSVENIVNGNSSGNGKLAVTTAAVDVQVGTVEVNTACPEVPENSIFAESVEVKAKTGPSRCTTCRKRVGLTGFSCKCGNLFCSMHRYSDKHDCPFDYRTDGQKAIAEANPVIKADKLDKI 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03511 172 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Trre13g03511 172 Pfam AN1-like Zinc finger 113 149 IPR000058 GO:0008270
Trre13g03511 172 Gene3D - 1 62 - -
Trre13g03511 172 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Trre13g03511 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 54 - -
Trre13g03511 172 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
Trre13g03511 172 SMART AN1_Zf_4 113 150 IPR000058 GO:0008270
Trre13g03511 172 FunFam Zinc finger AN1-type containing 6 89 168 - -
Trre13g03511 172 Gene3D - 89 168 IPR035896 -
Trre13g03511 172 SUPERFAMILY AN1-like Zinc finger 103 167 IPR035896 -
Trre13g03511 172 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 172 - -
Trre13g03511 172 ProSiteProfiles Zinc finger AN1-type profile. 107 153 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03511 Trre-Chr13 42803907 42804425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03511 5 172 C2H2 Transcription Factor Family AT3G52800 42.690 2.55e-40 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03511 - - psat:127126276 315.079