LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre13g03501	ATGGAGATAGAGAACAGTGAAATGAAGTCAAAGAAAATGGAAGAGTATGAAGTTATAGAACAAATTGGTAGAGGAGCATTTGGTTCTGCTTTTCTTGTTCTTCATAAGTCTGAGAAAAAGAGGTATGTGCTGAAAAAGATTCGTTTGGCCAAACAGACAGAGAAGTTCAAAAGAACAGCACACCAAGAGATGAATCTGATTGCAAAACTGAATAACCCTTATATTGTGGATTACAAAGATGCTTGGGTGGAGAAGGAGGACCATGTATACATTATAACTGGCTATTGTGAAGGAGGTGACATGGCCGAGAGCATTAAGAAAGCTCGAGGATCATTTTTTCCCGAGGAGAAGGTCTGCAAATGGCTAACTCAATTGTTGATAGCCGTAGATTACTTACACTCTAACCGTGTAATCCACAGGGATCTTAAGTGTTCCAACATATTCCTCACCAAGGACAACAGTATTCGGCTCGGTGATTTTGGTCTTGCAAAGCGACTTAATGGAGAAGACCTCGCTTCCTCGGTCGTTGGAACTCCAAATTACATGTGTCCTGAGCTTCTCGCGGACATACCATATGGTTATAAATCTGATATATGGTCTCTCGGTTGCTGCATGTTTGAGATTGCTGCACATCAATCAGCATTTCGTGCTCCGGACATGGCTGGTCTTATCAATAAAATAAACAGATCCTCCATTTCTCCACTTCCAATTGTTTATTCTCCCACACTGAAACAAATTATCAAGAGCATGCTGAGGAAAAATCCAGAACATAGGCCAACAGCTGCGGAATTGTTAAGACACCCACATTTACAACCTTATGTTATTCGCTGTCAGAATGCATCATCTAATGTTCTTCCAATATATCCTATAGTTAATAACTCAAAGGATAAAACAAAAAGATCTCCCAAATCTAATGGCAGAGAAATGGGATTTGTAAATCGTTTGGAACGGGTTCATCCGATTGAGGGAAACGGTGATGTACAGCCAAGAAATCTTCGTAATAATTGCGAGGTAACAGTCTCAACAAGCACCCAATACAACCTTGAGGCCAAGATGAATGCTCTTACAAGCTACACAGTTGAATCTTCTACTAGTATTAGCGACTCAAAAGATGGTTCAACAACATCCGAATCAACTACTTGTAGTGTCTGCAAGGAGGACTATAAAAGTAGACCACCAAGGGAAATGGCTAACAATGGAATCACCTCGAAGAGCATACACGATTCTCTGCATGAAGAAGAACAAAGATTTGCTGCAGCTACCACCGAAGTTGAAGATACCTTCTCGAGGGAAGGTTTTGGTAATGCTGAAGCGCAGAGGGAACATACCAAACTTGATGACCTCAGGAAATCGACTACTTCCAGTGCAGGCAGTAGCAGCACTGACAAAAGCAATTCAATTAACGATGAAAGTTCATCGCTAATAATGCATCCTCTTAGGGTTGAACATGACAGTACCGAGTCCAGAGACTACTCAAAGAAAAATGAAAACCGTGATTCCTTTACCGAAGAAGGCTTGTATATAAACGGCTTGTCGTCAGAGAGTATCGATAATCATAACACTGATACACTCGGAGTTAAGGATGATAATGTAGCTAAACAAAGCACTATTTGCTCCACACAGAAAGATAATAATAATGTAACACCAAACGGCATTTCATTGAGTGTAGTTACTGCAACAGATGGTGACGGTGACGAAACAATCAACGATGCGTTGGATAGTCCATGCCAGAAAAGAGCCGATGCATTGGAATCTCTGCTCGAGTTATGTGCTCAGTTACTTAAACAAGATAAACTTGAAGAGCTTGCTGGTGTGTTAAGACCATTTGGAAAAGAAGCTGTGTCATCAAGAGAAACAGCAATATGGTTGACAAAAAGCCTCATATCTGCTCAAAAGTTTAATCCTGAAAACTAG	1914	0.4065	MEIENSEMKSKKMEEYEVIEQIGRGAFGSAFLVLHKSEKKRYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNNPYIVDYKDAWVEKEDHVYIITGYCEGGDMAESIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNSIRLGDFGLAKRLNGEDLASSVVGTPNYMCPELLADIPYGYKSDIWSLGCCMFEIAAHQSAFRAPDMAGLINKINRSSISPLPIVYSPTLKQIIKSMLRKNPEHRPTAAELLRHPHLQPYVIRCQNASSNVLPIYPIVNNSKDKTKRSPKSNGREMGFVNRLERVHPIEGNGDVQPRNLRNNCEVTVSTSTQYNLEAKMNALTSYTVESSTSISDSKDGSTTSESTTCSVCKEDYKSRPPREMANNGITSKSIHDSLHEEEQRFAAATTEVEDTFSREGFGNAEAQREHTKLDDLRKSTTSSAGSSSTDKSNSINDESSSLIMHPLRVEHDSTESRDYSKKNENRDSFTEEGLYINGLSSESIDNHNTDTLGVKDDNVAKQSTICSTQKDNNNVTPNGISLSVVTATDGDGDETINDALDSPCQKRADALESLLELCAQLLKQDKLEELAGVLRPFGKEAVSSRETAIWLTKSLISAQKFNPEN	637

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre13g03501	637	CDD	STKc_Nek	16	270	-	-
	Trre13g03501	637	ProSiteProfiles	Protein kinase domain profile.	16	270	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre13g03501	637	Gene3D	Transferase(Phosphotransferase) domain 1	96	284	-	-
	Trre13g03501	637	FunFam	serine/threonine-protein kinase Nek6 isoform X2	96	284	-	-
	Trre13g03501	637	Pfam	Protein kinase domain	16	269	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre13g03501	637	PANTHER	SERINE/THREONINE-PROTEIN KINASE NEK	13	509	-	-
	Trre13g03501	637	MobiDBLite	consensus disorder prediction	361	385	-	-
	Trre13g03501	637	SMART	serkin_6	16	270	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre13g03501	637	FunFam	Serine/threonine-protein kinase Nek6	1	95	-	-
	Trre13g03501	637	Gene3D	Phosphorylase Kinase; domain 1	1	95	-	-
	Trre13g03501	637	SUPERFAMILY	Protein kinase-like (PK-like)	13	305	IPR011009	-
	Trre13g03501	637	MobiDBLite	consensus disorder prediction	476	498	-	-
	Trre13g03501	637	MobiDBLite	consensus disorder prediction	435	449	-	-
	Trre13g03501	637	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	137	149	IPR008271	GO:0004672\|GO:0006468
	Trre13g03501	637	MobiDBLite	consensus disorder prediction	361	498	-	-
	Trre13g03501	637	MobiDBLite	consensus disorder prediction	406	420	-	-
	Trre13g03501	637	MobiDBLite	consensus disorder prediction	450	473	-	-
	Trre13g03501	637	ProSitePatterns	Protein kinases ATP-binding region signature.	22	45	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre13g03501	Trre-Chr13	42684526	42688709	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre13g03501	9	271	MAP Kinase Kinase Kinase	AT3G13530	33.208	1.39e-38	151

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NEK	Trre13g03501		Pkinase	3.7e-67	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre13g03501	K08857		-	gmx:100793379	905.59