Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03500 ATGGCTGATAATTATAACCCTTACTCTAATCTTTTCTCTTCTTCATCATCATCATCATCATCATCATCATCAACTTTCTTCAATTTCAACCATATTTTACCATCTTCAAACCCTTCAACACATCACAACCCTTTTCTTCACCACCATAACTTCATCAACAACCATCACTCCTTTTTTCACTACCACCATCTTTCATCTTCTTCTTCTTCTTCACCACCTTCTCCTCCTCTCAGACAAGAACTACCTCTTTTAAGCCTAATTCCAACCAAACAAGAACTAGAATATGAAGATCAACAAGAACAACATGAAGATATTATTCAAGATCATCAAGACCTTCCTTGCACTGCCATGGATTTAGAAGAAAGAGAAGAAAATGGTACTACTACTACTACTAGTTCTTCTTCTACTACTGTCACTGTTGCACTTCACATAGGTTTACCAAACCCTAGTGCTGCTGAAATGGCTTCTCTACTACTTTCTTCCTCTAACTCGTCTGATATCACTGCTGATAATAACAAAGAATTACATGGCGGCGAGGATTCTTGTTCAGGTTTCATGGTTAATAATAGACTTAACAAAGGACAATATTGGATCCCTACTCCTTCTCAAATTCTCATTGGTCCTACTCAATTCTCTTGCCCTGTTTGCTCTAAAACCTTCAACAGATATAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGTCCTGAATCTCTAAGAGGGACACAACCAACAGGAATGCTAAGACTACCTTGTTACTGTTGTGCACCAGGATGTAGAAACAACATTGATCATCCAAGAGCAAAGCCATTGAAAGATTTTAGAACACTTCAAACACATTACAAGAGAAAACATGGAATTAAGCCTTTCATGTGTAGAAAATGTAGCAAAGCTTTTGCTGTTAGAGGAGATTGGAGAACTCATGAAAAGAATTGTGGCAAGTTATGGTATTGTATCTGTGGTTCTGATTTCAAACATAAGAGATCTCTTAAAGATCATATTAAAGCTTTTGGAAATGGTCATGCTGCTTATGGATGTGATGGATTTGAAGAAGATGATGAACCTGCTTCTGAAGTAGAGCAAGATAATGAATAA 1110 0.373 MADNYNPYSNLFSSSSSSSSSSSSTFFNFNHILPSSNPSTHHNPFLHHHNFINNHHSFFHYHHLSSSSSSSPPSPPLRQELPLLSLIPTKQELEYEDQQEQHEDIIQDHQDLPCTAMDLEEREENGTTTTTSSSSTTVTVALHIGLPNPSAAEMASLLLSSSNSSDITADNNKELHGGEDSCSGFMVNNRLNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCSKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYGCDGFEEDDEPASEVEQDNE 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03500 369 ProSitePatterns Zinc finger C2H2 type domain signature. 213 233 IPR013087 -
Trre13g03500 369 Pfam Zinc finger, C2H2 type 211 230 IPR013087 -
Trre13g03500 369 SMART c2h2final6 211 233 IPR013087 -
Trre13g03500 369 SMART c2h2final6 295 315 IPR013087 -
Trre13g03500 369 FunFam zinc finger protein WIP2-like 210 233 - -
Trre13g03500 369 Gene3D Classic Zinc Finger 210 233 - -
Trre13g03500 369 PANTHER ZINC FINGER PROTEIN WIP2 41 367 IPR043584 GO:0003700|GO:0010468
Trre13g03500 369 Gene3D Classic Zinc Finger 256 342 - -
Trre13g03500 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 211 238 IPR013087 -
Trre13g03500 369 SUPERFAMILY beta-beta-alpha zinc fingers 207 233 IPR036236 -
Trre13g03500 369 FunFam Zinc finger protein WIP2 264 346 - -
Trre13g03500 369 SUPERFAMILY beta-beta-alpha zinc fingers 277 315 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03500 Trre-Chr13 42649581 42652001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03500 77 369 C2H2 Transcription Factor Family AT3G57670 68.454 3.32e-141 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre13g03500 zf-C2H2 0.0046 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03500 - - zju:107403750 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03500 13 42649581 42652001 Trre13g03500 13 42649581 42652001 ECH
Trre13g03500 13 42649581 42652001 Trre11g04480 11 57007638 57010420 ECH
Trre13g03500 13 42649581 42652001 Trre1g02087 1 16626353 16629679 PCT