Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03492 ATGGAGAGAGGAGCGAGTAAGAAGAAAGCACCACCTCTCTCTTTGGAGCAATTCATCTCTATAACTACCCCTCTTCTCGATTTGGAAAAGGATGCTGAGATATCCAGTTCAATCGCTACTGGCGCGTCGAGGAATTTGGATACTGCTCAAAAGAGAGGATCAACAATCCTTAACTTGAAGTGTGTGGATGTTCAGACGGGGCTTATGGGAAAGTCTTTGATCGAGTTCCAATCGACAAAAGCAGATGTGCTTCCTGCACACAAGTTTGGTACTCATGATGTTGTTGTTTTAAAACTCAACAAGGCTGACTTAGGTTCTCCTGCTCTTGGGCAAGGTGTAGTTTACAGATTAAAGGACTCATCAATTACTGTTGCTTTTGATGATATACCAGAAGATGGATTAAACAGTCCCCTAAGGCTGGAAAAAGTTGCAAATGAGGTGACATATCACAGGATGAAAGATGCATTAGTACAGTTGAGTAAAGGAGTGCATAAGGGTCCTGCTTCTGATCTAATACCTGTCTTGTTTGGGGAGAGGCAACCAACAGTGTCCAAGAAGGTTGCATCCTTCACTTCCATTAATAGAAATCTTGATCAGTCTCAGAAAGATGCAATTACAAAAGCCCTATCGTCGAAGAATGTTTTCTTGCTACATGGACCTCCTGGAACGGGAAAAACTACAACAGTGGTAGAAATTATATTACAAGAAGTAAAACGTGGATCTAAGATTCTTGCTTGTGCTGCATCAAATATTGCTGTTGACAACATCGTTGAGCGGCTAGTTCCACACAAAGTTAAACTGGTGAGGATCGGTCATCCCGCACGTTTATTGCCTCAAGTGCTGGACAGTGCATTGGATGCTCAGGTACTACGAGGAGATAATAGTGGTCTCGCAAATGACATTCGAAAAGAAATGAAGGTATTGAATGGAAAGCTGCTAAAAACCAAAGAGAAAAATACAAGGAGGGAGATACAGAAGGAGCTTAGGACTCTATCTAGAGAAGAGCGGAAAAGGCAGCAGCTTGCTGTGACAGATGTAATTAAAACTGCAGATGTAATATTAACTACTCTGATTGGGGCTTTCACTAAGAAACTTGACCGCACTTCATTTGATTTGGTGATTATCGACGAAGCTGCTCAAGCACTTGAGGTAGCATGCTGGATACCTCTGCTAAAGGGTACAAGATGTATACTTGCAGGAGATCATCTTCAACTTCCTCCAACCATTCAAAGTGTTGAAGCTGAGAAGAAAGGGTTAGGAAGAACCCTCTTTGAACGACTTGCTGAACTGTATGGAGATGAAGTCACATCTATGCTTACTGTCCAGTATCGTATGCATCAACTTATCATGGATTGGTCTTCTAAAGAGCTTTACAACAGTAAGGTCAAGGCTCATCCAAGTGTTGCTGCACATATGCTATATGATCTTGAGGATGTGAAGAGGACTTCTTCAACTGAACCAACCCTTCTTCTCATAGATACAGCTGGATGTGATATGGATGAAAAGAAAGATGAAGAAGATAGCACCCTCAATGAAGGAGAATCTGAGGTTGCTATGGCTCATGCAAAGCGATTAGTGCAAAGTGGGGTGCTTCCTTCTGATATTGGAATTATTACCCCATATGCTGCCCAGGTTGTTTTACTTAAGATGTTGAGAAACAAGGAGAGCTCGCTGAAGGATATTGAAATCTCAACAGTTGATGGTTTCCAGGGTAGGGAGAAGGAAGCCATTATTATATCAATGGTTCGATCAAATTCAAAACAGGAGGTGGGCTTTCTGAGTGATCGCCGGCGAATGAATGTGGCCGTGACCCGGGCAAGAAGGCAATGCTGTATTGTCTGTGACACTGATACAGTCAGTAGTGATGGATTTCTAAAGCGGTTGGTTGAATATTTTCAAGAGCACGGTGCATATCAGAGTGCATCTGAGTACGAGAATGAGTAG 1944 0.4244 MERGASKKKAPPLSLEQFISITTPLLDLEKDAEISSSIATGASRNLDTAQKRGSTILNLKCVDVQTGLMGKSLIEFQSTKADVLPAHKFGTHDVVVLKLNKADLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYHRMKDALVQLSKGVHKGPASDLIPVLFGERQPTVSKKVASFTSINRNLDQSQKDAITKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHKVKLVRIGHPARLLPQVLDSALDAQVLRGDNSGLANDIRKEMKVLNGKLLKTKEKNTRREIQKELRTLSREERKRQQLAVTDVIKTADVILTTLIGAFTKKLDRTSFDLVIIDEAAQALEVACWIPLLKGTRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAELYGDEVTSMLTVQYRMHQLIMDWSSKELYNSKVKAHPSVAAHMLYDLEDVKRTSSTEPTLLLIDTAGCDMDEKKDEEDSTLNEGESEVAMAHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLRNKESSLKDIEISTVDGFQGREKEAIIISMVRSNSKQEVGFLSDRRRMNVAVTRARRQCCIVCDTDTVSSDGFLKRLVEYFQEHGAYQSASEYENE 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03492 647 CDD SF1_C_Upf1 445 633 IPR047187 -
Trre13g03492 647 NCBIfam IGHMBP2 family helicase 345 641 IPR004483 GO:0003677|GO:0005524
Trre13g03492 647 CDD DEXXQc_SMUBP2 196 444 - -
Trre13g03492 647 Coils Coil 298 337 - -
Trre13g03492 647 Gene3D - 23 427 IPR027417 -
Trre13g03492 647 FunFam DNA-binding protein SMUBP-2 41 143 - -
Trre13g03492 647 Gene3D - 41 143 - -
Trre13g03492 647 Gene3D - 443 647 IPR027417 -
Trre13g03492 647 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 13 645 - -
Trre13g03492 647 SMART ultradead3 193 444 IPR014001 -
Trre13g03492 647 Pfam AAA domain 197 411 IPR041677 GO:0004386
Trre13g03492 647 FunFam P-loop containing nucleoside triphosphate hydrolase 443 647 - -
Trre13g03492 647 SMART AAA_5 211 433 IPR003593 GO:0016887
Trre13g03492 647 Pfam AAA domain 420 616 IPR041679 -
Trre13g03492 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 628 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03492 Trre-Chr13 42572645 42578244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03492 170 380 Core DNA Replication Machinery Family AT1G08840 27.014 2.35e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03492 - K19036 gmx:100810545 1139.02