Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03467 ATGCTTAGAGATCACAATTGCAGAAATGTAGAAATTCGAGAAGAACTTCAAGCACTGCATGGTCACGACGATGCCATTTGTTCCAATGTGTTTGGAGAATGGCGTGTCAAGGGTTTAAGCGAGACAAGTAGATGTATAGGAAATGCATATTTGAAGAAAGCTGATTTTACTATAGAGAGAGGATTTGAAGCCCCACCAGGGGAAAAGGTGACGTCAATATTCACGGAACCAGTGCTATCAGCCGAACCAGAATTTTATACAAGAGATTTAGATGGTACTGAAAAGTTCATCATATTTGGATCTGGTGGATTTTGGAAATTGCTAACAAACGAGGAGGCTGCTAAGATCGTTAATGACCATCCGCGAGGAGGAGTTGCAAAGAGGCTTGCAGCTCAGGCTGTAAAAATTGCAGCCGAAAGATGGGGCTTAACCTATAGGGAAGTGATGCTAGCCCCTAAGGGAGTGAAAATAAGCGGAGAACCTAATTCTTCTGAAATAATGAGGCCGCTTTATCATGATGATATAACTGTAATCGTTGTATATTTGGACTTAAATCTTCCAGTTACAGTAGACAGCAAGACTTACAACAGTTACAGAAGCCACTCAGATAGTGTTGTACCATCGGTTTTTGGCGGTCCTGTGGAAGTTGATGACAAATGGGATTATGGGAAGATTGATGATTAG 684 0.4152 MLRDHNCRNVEIREELQALHGHDDAICSNVFGEWRVKGLSETSRCIGNAYLKKADFTIERGFEAPPGEKVTSIFTEPVLSAEPEFYTRDLDGTEKFIIFGSGGFWKLLTNEEAAKIVNDHPRGGVAKRLAAQAVKIAAERWGLTYREVMLAPKGVKISGEPNSSEIMRPLYHDDITVIVVYLDLNLPVTVDSKTYNSYRSHSDSVVPSVFGGPVEVDDKWDYGKIDD 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03467 227 Pfam Protein phosphatase 2C 29 134 IPR001932 -
Trre13g03467 227 SUPERFAMILY PP2C-like 3 183 IPR036457 -
Trre13g03467 227 Gene3D - 1 186 IPR036457 -
Trre13g03467 227 ProSiteProfiles PPM-type phosphatase domain profile. 1 182 IPR001932 -
Trre13g03467 227 PANTHER PROTEIN PHOSPHATASE 3 181 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03467 Trre-Chr13 42428838 42429694 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03467 4 210 PP2C-type Phosphatase Gene Family AT5G06750 39.713 1.16e-43 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03467 K01102 - tpra:123898969 181.415