Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03466 ATGAACACGGAAGCTGCTAAAGAGATTATGGCAGAAACTGTTTCTGCAATGGAGAAACAATTCACTGAGGTAGCTGAATTTAGTTATACGGGTTGGAGAAACCCATATATGAGTGTCGTGAGTTCTGGATGCTTGATTTGTATGATTTGGGGACGGCAGTTGTATCTTGCCAATCTCGGAGACTCGCGAGCTATACTGTGTTCTAACCAGCTTGGTTGTGAATTGGATGTTCATCCGATGCTTAGAGATCACAATTGCAGAAATGTAGAAATTCGAGAAGAACTTCAAGCACTGCATGGTCACGACGATGCCATTTGTTCCAATGTGTTTGGAGAATGGCGTGTCAAGGGTTTAAGCGAGACAAGTAGATGTATAGGAAATGCATATTTGAAGAAAGCTGATTTTACTATAGAGAGAGGATTTGAAGCCCCACCAGGGGAAAAGGTGACGTCAATATTCACGGAACCAGTGCTATCAGCCGAACCAGAATTTTATACAAGAGATTTAGATGGTACTGAAAAGTTCATCATATTTGGATCTGGTGGATTTTGGAAATTGCTAACAAACGAGGAGGCTGCTAAGATCGTTAATGACCATCCGCGAGGAGGAGTTGCAAAGAGGCTTGCAGCTCAGGCTGTAAAAATTGCAGCCGAAAGATGGGGCTTAACCTATAGGGAAGTGATGCTAGCCCCTAAGGGAGTGAAAATAAGCGGAGAACCTAATTCTTCTGAAATAATGAGGCCGCTTTATCATGATGATATAACTGTAATCGTTGTATATTTGGACTTAAATCTTCCAGTTACAGTAGACAGCAAGACTTACAACAGTTACAGAAGCCACTCAGATAGTGTTGTACCATCGGTTTTTGGCGGTCCTGTGGAAGTTGATGACAAATGGGATTATGGGAAGATTGATGATTAG 921 0.4202 MNTEAAKEIMAETVSAMEKQFTEVAEFSYTGWRNPYMSVVSSGCLICMIWGRQLYLANLGDSRAILCSNQLGCELDVHPMLRDHNCRNVEIREELQALHGHDDAICSNVFGEWRVKGLSETSRCIGNAYLKKADFTIERGFEAPPGEKVTSIFTEPVLSAEPEFYTRDLDGTEKFIIFGSGGFWKLLTNEEAAKIVNDHPRGGVAKRLAAQAVKIAAERWGLTYREVMLAPKGVKISGEPNSSEIMRPLYHDDITVIVVYLDLNLPVTVDSKTYNSYRSHSDSVVPSVFGGPVEVDDKWDYGKIDD 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03466 306 Pfam Protein phosphatase 2C 16 213 IPR001932 -
Trre13g03466 306 SMART PP2C_4 1 259 IPR001932 -
Trre13g03466 306 SUPERFAMILY PP2C-like 7 262 IPR036457 -
Trre13g03466 306 ProSiteProfiles PPM-type phosphatase domain profile. 1 261 IPR001932 -
Trre13g03466 306 PANTHER PROTEIN PHOSPHATASE 7 260 IPR015655 GO:0004722|GO:0006470
Trre13g03466 306 Gene3D - 1 265 IPR036457 -
Trre13g03466 306 CDD PP2Cc 2 261 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03466 Trre-Chr13 42428838 42429931 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03466 6 289 PP2C-type Phosphatase Gene Family AT5G06750 36.897 9.74e-55 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03466 K01102 - tpra:123898969 227.639