Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03464 ATGTCTCTGAATGATGAGTTTGATCAAGATCCTCTTTCTTGGTCAATGCAACTGGAGAAACATTTTTGTGGTGAATTCTCAATGGCTTCGGTTCAGTCGAATCTAAAAATGGAAGATAAAGGTCAAGTCGAGGTGTGCAACTATGCCACATTTGTTGGAATCTATGATGGAAGCAAAGGAGATGCTGCTGCCAGGTATCTCGACAATTACATCTTCGCGGATTTAGTCGAGCGTATTGAGAAATATACAAAGAGATTTACTATGAACATGGAAGCTGCTAAAGAGATTATGGTAGAAACTGTTTCTGAAATGGAGAAACAATTCACTGAGGTAGCTGAATTTGGTTATACGGGTTGGAGAAACCGATACATGAGTGTAGTGAGTTCTGGATGCTTGATTTGTATGATTTGGGGACGGCAGCTGTATCTTGCCAATCTCGGAGACTCACGAGCTATACTGTGTTCTAACCAGCGTGGTTCTGAATTGGATGTTCATCCGATGCTTAGAGATCACAATTGTAGAAATTTAGAAATTCGAGAAGAACTTCAAGCACTACATGGACACGACGATGCCATTTGTTCCAATGTGTTTGGAGAATGGCGTGTCAAGGGTTTAAGCGAGACAAGTAGATGTATAGGAAATGCATATTTGAAGAAAGCTGATTTTACTACAGAGAGAGGATTTGAAGCCCCACCAGGGGAAAAGGTGACGTCAATATTCACGGAACCAGTGCTATCAGCCGAACCAGAATTTTATACAAGAGATTTAGATGGTACTGAAAAGTTCATCATATTTGGATCTGGTGGATTTTGGAAATTGCTAACAAACGAGGAGGCTGCTAAGATCGTTAATGACCATCCGCGAGGAGGAGTTGCAAAGAGGCTTGCAGCTCAGGCAGTAAAAATTGCAGCTGAAAAATGGGGCTTAACCTATAGGGAAGTGATGCTAGCCCCTAAGGGAGTGAAAATAAGCGGAGAACCTAATTCTTCTGAAATAATGAGGCCGCTTTATCATGATGATATAACTGTAATCGTTGTATATTTGGACTTAAATCTTCCTGTTACAGTAGACAGCAAGACTTACAACAGTTACAGAAGCCACTCAGATAGTGTTCTACCATCGGTTTTTGGCGGTCCTGTGGAAGTTGATGACAAATGGGATTATGGGAAGATTGATGATTAG 1182 0.4112 MSLNDEFDQDPLSWSMQLEKHFCGEFSMASVQSNLKMEDKGQVEVCNYATFVGIYDGSKGDAAARYLDNYIFADLVERIEKYTKRFTMNMEAAKEIMVETVSEMEKQFTEVAEFGYTGWRNRYMSVVSSGCLICMIWGRQLYLANLGDSRAILCSNQRGSELDVHPMLRDHNCRNLEIREELQALHGHDDAICSNVFGEWRVKGLSETSRCIGNAYLKKADFTTERGFEAPPGEKVTSIFTEPVLSAEPEFYTRDLDGTEKFIIFGSGGFWKLLTNEEAAKIVNDHPRGGVAKRLAAQAVKIAAEKWGLTYREVMLAPKGVKISGEPNSSEIMRPLYHDDITVIVVYLDLNLPVTVDSKTYNSYRSHSDSVLPSVFGGPVEVDDKWDYGKIDD 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03464 393 ProSiteProfiles PPM-type phosphatase domain profile. 25 348 IPR001932 -
Trre13g03464 393 SUPERFAMILY PP2C-like 9 349 IPR036457 -
Trre13g03464 393 SMART PP2C_4 19 346 IPR001932 -
Trre13g03464 393 CDD PP2Cc 26 348 IPR001932 -
Trre13g03464 393 Gene3D - 9 352 IPR036457 -
Trre13g03464 393 PANTHER PROTEIN PHOSPHATASE 23 347 IPR015655 GO:0004722|GO:0006470
Trre13g03464 393 Pfam Protein phosphatase 2C 50 300 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03464 Trre-Chr13 42411566 42413818 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03464 12 376 PP2C-type Phosphatase Gene Family AT5G06750 38.275 2.43e-75 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03464 K01102 - tpra:123896634 257.684