Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03460 ATGAACCCGAGTAGCCACCAACCACTCAAAGTCTCAAAGTTTGCTCTCTCTCTTTTTCTATATCGTGAGTGTGATAAATATTTTGCAAATGAAAGGATGTGCTGTGAGTCGGAGCGGTTAAAGTCTGCACAATCTCCGATTTTGACAAGCGATTCTCAACCAAGAAACAACGCGATGAATCACTTAACCGTTGGTACTGAAGATGCTTTTGCGAGCTTGCTTGAGCTTGCTGCTAATAATGATGTTGAAGGGTTCAAACGAATGATTGAGTGTGATCCTACTTCGGTAGATGAGATTGGATTATGGTATGGTCGTCGCAAGGGATCGAAGCAGATGGTCAATGAGGAAAGGACGCCTTTGATGGTTGCTGCTACCTATGGTAGCATTAATGTTATGAAACTGATTATTTCTCTATCTGGTGTTGACATCAATAGACCTTGTGGCCTTGACAAGAGCACTGCCCTTCACTGTGCTGCATCGGGTGGGGCTGAAAATGCTGTTGATGCTGTGAAGCTGCTTCTTGCAGCAGGTGCTGATCCCAATTCTGTGGATGCTAATGGGGATCGTCCGTTAGATGTTATTGTTTATCCCCCTAAGCTTGAGTTTGTGAAAAACAGTCTTGAAGAGCTTCTTCAAAATGGTGATCCTAGTGCTGGTTGTAATCTTAGGGTGATTACAAACTCGTTTAATTCGTATTCTCCTCCTTTGTCAGCTTCACCTGAGAATGGCTCTCCTTCTCCTCCACCGGATCTCCTGTTGAAGTTAAAGTCAATTGATGTTCCACTATCTCCTGCTGGATCTGAGAAGAAAGAATACCCTGTTGATCCATCCCTTCCTGATATCAAAAACAGCATATATTCAACTGATGAATTCAGAATGTATTCTTTCAAGGTCAGACCTTGTTCACGGGCTTATTCCCATGATTGGACTGAATGCCCTTTTGTTCATCCAGGGGAGAATGCCCGGAGAAGGGACCCAAGGAAGTTTCATTACAGCTGTGTCCCTTGTCCTGATTTTCGCAAGGGTGCTTGCCGGCGAGGGGATATGTGTGAATACGCTCATGGTGTTTTCGAGTGTTGGCTGCATCCTGCACAATATAGAACCCGTCTCTGCAAGGACGGGATAAACTGCTCCAGAAGAGTTTGCTTCTTTGCCCACACTGCTGAAGAGCTTCGACCGTTGTATGTTTCTACTGGTTCTGCTGTCCCCTCACCTCGGTCAAGCGCGTCGTCTGCTATGGATTTTGCTGCAGCCATGAGCATGTTACCTGGCTCGCCTTCTTCGATGTCTGTTATGTCTCCTTCACCATTCACTCCACCCATGTCCCCTTCCGGCAATGGCATTTCACACAACTCTGTTGCTTGGCCCCAACCAAACATCCCAGCATTGCATCTTCCTGGAAGTAATCTTCAGTCCAGTCGTTTGAGATCTTCACTCAATGCTAGAGATATTCATATGGATGAATTTGAGATGTTATCTGAATATGATCAACAGCAACAGCTCCTTAATGAGTTGGCATGCCTCTCTCCACGTCATTTGAATTCTAACAGTCTTAGTCGCTCTGGTCGAATGAAGCCATTGAATCCATCAAATCTCGATGACCTCTTTTCTGCTGAGAGTTCTTCTCCTCGCTATGCTGATCCAACACTGAATTCAGCTGTTTTTTCTCCAACTCACAAATCAGCTGTCTTTAATCAGTTTCAGCAGCAGCAGAACATGTTGTCACCCGTGAATACAAATTTCTCTCCTAAAAATGTTGATCATCATTTATTGCAGGCAGCTTCTTATGGTGTTCAGCCATCAGGAAGAATGTCTCCACGAAACGTGGAACCTATCTCTCCAATGAGCTCAAGGATGTCAATGCTCGCTCAACGCGATAAGCAGCAGCAGTTTCGCAGCCTAAGCTTCCGCGAGCACGGCTCTAACTCTATGCTTGCAGCTGCTGGCTCAGTCAATTCTTGGTCCAAATGGGAATCTCCCAATGGTAAGTTGGATTGGGCTCACGATGCAGATGAAGTAGGCAAGCTCCGCAGATCATCTTCGTTTGAGCTTGGGAACAACGGTGAGGAGCCTGATTTATCATGGGTGCAGTCACTTGTGAAAGAATCTCCAACCGAGATTAAAGAGAAATTGGCAACTTCTATCTCAAGTGCTGCGCCAACTGGATCTTCCGGTGAGGGGTTGAATATGAGCACACAAATGGAGTCCGTTGATCATGCTGTATTGGGAACATGGCTTGAACAGATGCAGCTCGATCATCTTGTTACATTAACTAAGAAAGGAAGCAGAAAGAAAAAGAATGGGAGGAAAAAAAATTCATTCTCAAGTTTAGTGTTACAAAGAAAAACAAGTTACAAAAGGGTCATTGGATTTAATTTCCTCAAGTCTCCATTTTGGATCAGTTTTGGGGATGATACAGGATTTGGATGTAATATTTCTATGTAA 2445 0.445 MNPSSHQPLKVSKFALSLFLYRECDKYFANERMCCESERLKSAQSPILTSDSQPRNNAMNHLTVGTEDAFASLLELAANNDVEGFKRMIECDPTSVDEIGLWYGRRKGSKQMVNEERTPLMVAATYGSINVMKLIISLSGVDINRPCGLDKSTALHCAASGGAENAVDAVKLLLAAGADPNSVDANGDRPLDVIVYPPKLEFVKNSLEELLQNGDPSAGCNLRVITNSFNSYSPPLSASPENGSPSPPPDLLLKLKSIDVPLSPAGSEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGINCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASSAMDFAAAMSMLPGSPSSMSVMSPSPFTPPMSPSGNGISHNSVAWPQPNIPALHLPGSNLQSSRLRSSLNARDIHMDEFEMLSEYDQQQQLLNELACLSPRHLNSNSLSRSGRMKPLNPSNLDDLFSAESSSPRYADPTLNSAVFSPTHKSAVFNQFQQQQNMLSPVNTNFSPKNVDHHLLQAASYGVQPSGRMSPRNVEPISPMSSRMSMLAQRDKQQQFRSLSFREHGSNSMLAAAGSVNSWSKWESPNGKLDWAHDADEVGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKLATSISSAAPTGSSGEGLNMSTQMESVDHAVLGTWLEQMQLDHLVTLTKKGSRKKKNGRKKNSFSSLVLQRKTSYKRVIGFNFLKSPFWISFGDDTGFGCNISM 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03460 814 FunFam Zinc finger CCCH domain-containing protein 66 288 356 - -
Trre13g03460 814 ProSiteProfiles Zinc finger C3H1-type profile. 335 357 IPR000571 GO:0046872
Trre13g03460 814 SMART ANK_2a 150 182 IPR002110 GO:0005515
Trre13g03460 814 SMART ANK_2a 115 145 IPR002110 GO:0005515
Trre13g03460 814 Gene3D - 31 238 IPR036770 -
Trre13g03460 814 ProSiteProfiles Ankyrin repeat profile. 150 185 IPR002110 GO:0005515
Trre13g03460 814 SMART c3hfinal6 330 356 IPR000571 GO:0046872
Trre13g03460 814 SMART c3hfinal6 365 388 IPR000571 GO:0046872
Trre13g03460 814 Gene3D - 331 393 - -
Trre13g03460 814 SUPERFAMILY Ankyrin repeat 73 201 IPR036770 -
Trre13g03460 814 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 335 355 IPR000571 GO:0046872
Trre13g03460 814 PANTHER UNKEMPT FAMILY MEMBER 75 703 IPR045234 -
Trre13g03460 814 ProSiteProfiles Ankyrin repeat region circular profile. 150 184 - -
Trre13g03460 814 Pfam Ankyrin repeats (3 copies) 77 184 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03460 Trre-Chr13 42390764 42396848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03460 67 752 C2H2 Transcription Factor Family AT5G12850 53.607 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre13g03460 Ank_2 7.1e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03460 - - ccaj:109796653 1155.97