Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03456 ATGGATATGCTTCAAAAGGAGTGTCTCCTTAGGTTAGGATTGTTGCTATGTGTTTCATTTGGCTTCTTGCTACATTCTGTTGTAACAACTGTAATACCATTAGGTTCCAAACTTTCTGTGGTTGATAATGATTGTTGGGTTTCCTCCAATGGTGATTTCGCATTCGGGTTCTTTAACATTACTGATGAACCTAACCAGTTTAGTGTCGGCATTCGTTTCAATTCAAAGTCTATTCCTTATAGTCAGCAAACACTTGTATGGATTGCTGGTGCTCATGTCAAAGTAAGCAACATGTCCTATTTCCAACTCACTCCACAAGGGGAACTTGTCTTGTTTGATTCCTTACACGGAATCACTGTGTGGAGCAGTCAAACAGGAAATCGATATGTTGTTTCGGCCACGCTTCATGACAATGGAAATCTTGTTCTGATAGACACAAAACAAAACATCATTTGGCAAAGTTTTGATACTCCTTCTGATACACTTCTCCCAGGACAGAGTTTATCTGTTTACAAGACGCTTCGTGCTTCAACCAAGGACCCTCAGAGTAGTTACTACAGTCTTTACTTGAATGCTTCTGGTCGGTTACAGCTTCGTTGGGAGAGTAATATTGTATACTGGACTAGTGAAATCCCTTCTACTGCAAATCTCACTGCATTCCTTACAACCGATGGATCTCTTCAACTTCGAGACCAAAAACTTAAATCTGTTTGGAGTGTATTTGGAGCAGACCACAACGAGTCTGTGAGTTATCGATTTCTCAGGCTAGATTTGGATGGCAATCTCCGGTTATACTCATGGACAGAAGCTTCACAATCATGGAGATCTGTTTGGCAAGCTGTTGAGAATCAATGCAAAGTATTTGCTACTTGTGGCAAACGCGGTGTCTGTGTCTTCAATGCTTCAGGTTCTGCCGAGTGCAGGTGCCCTTTCAAGCAATGCGAACAGTTGTGCCGGAATGACTCTCAGTGTACGGTTGCGACCTTTTCCAACAATGGTAGTCCACAATGCTCCATAAAGAAAACTAATTACATAACTGGCTACGAAGATCCATCTCTAAGCTCAATATCATTTGTTAAGAGCTGCTCAGGTCCATTTGCAGTAGATCCTGGTCTCAAGAAGTCGCCTCCATCGAAACCGTCTCCTCGGAGGCTCTGTGTTCGTTGCATGGTAGGGGCAGCCTCAGGAACATTTGTGATCGTTGCTTTTGTCCAGCTGGGAATTGTTTTTTTCATCTGTAGAAGAAAAAGCTCTACTATTAGAAGAGTTACGTTAGCATTCACATTCCCGGATTCAAAAGGCTTAATGGTGTTATCCTCTGCAGAAATCAAGAGCATCACCGGAGATTTTAAGAATCGAATAGGGCCAAATATGTTCAAGGGTGCGCTACCGAGCAATTGTCTGGTTGCAATCAAAGACCTGAATGCATCCATAGAAGAAAGGAAATTCCGAAGCGCTGTTCTGAAGATAGGGAGCATCCACCACAAGAACCTAGTGAAGCTGGAGGGCTATTGTTGTGAGTTCAATAATCGATATTTGGTGTATGAATATGCCAAAGCCGGTTCATTGGACAAGTACTTAGGCGACTCTACTCTTTGCAAGAGGCTAACTTGGAGAAACAGAATTGAAATATGCTCGAGTGTGGCGAAGGCCATCTGTTATTTGCATTCGGGGTGCAGAGAATTTATAAGCCACGGAAATTTGAAATGTGAGAATGTGATGTTGGATGAAGATTCAGTTGCTAAGGTATCTGAATATGGATTTGCAATAGTCAATGGTGAGGCTACATACTGCGGCTTTTCAGCTGAAAAAGATGTAGGAGATTTTGGCAAATTAGTACTAACCTTGTTAACCGGGCAGCAAGATCACGAACAAGTTTGTGAATGGGCTTACGAAGAATGGATGGAAGGAAGGGTAGCTAATGTGGTTGATAAGAGAATCGAAGATGGTGTTAAGTCAGAAGAACTTGAACGTGCGTTAAGAATCGCATTCTGGTGCATTCAAATGGACGAACATAAAAGACCATCGATGGAAGAGGTAGTGAGAGTACTAGATGGTACATTGAATGTTGATCCGCCACCATCTCCATTTCATTTGCCTTGTATTCCACAAGAAAATGGTTCGGAATCAGAACTAGAATCAGTGGTTTAG 2151 0.4217 MDMLQKECLLRLGLLLCVSFGFLLHSVVTTVIPLGSKLSVVDNDCWVSSNGDFAFGFFNITDEPNQFSVGIRFNSKSIPYSQQTLVWIAGAHVKVSNMSYFQLTPQGELVLFDSLHGITVWSSQTGNRYVVSATLHDNGNLVLIDTKQNIIWQSFDTPSDTLLPGQSLSVYKTLRASTKDPQSSYYSLYLNASGRLQLRWESNIVYWTSEIPSTANLTAFLTTDGSLQLRDQKLKSVWSVFGADHNESVSYRFLRLDLDGNLRLYSWTEASQSWRSVWQAVENQCKVFATCGKRGVCVFNASGSAECRCPFKQCEQLCRNDSQCTVATFSNNGSPQCSIKKTNYITGYEDPSLSSISFVKSCSGPFAVDPGLKKSPPSKPSPRRLCVRCMVGAASGTFVIVAFVQLGIVFFICRRKSSTIRRVTLAFTFPDSKGLMVLSSAEIKSITGDFKNRIGPNMFKGALPSNCLVAIKDLNASIEERKFRSAVLKIGSIHHKNLVKLEGYCCEFNNRYLVYEYAKAGSLDKYLGDSTLCKRLTWRNRIEICSSVAKAICYLHSGCREFISHGNLKCENVMLDEDSVAKVSEYGFAIVNGEATYCGFSAEKDVGDFGKLVLTLLTGQQDHEQVCEWAYEEWMEGRVANVVDKRIEDGVKSEELERALRIAFWCIQMDEHKRPSMEEVVRVLDGTLNVDPPPSPFHLPCIPQENGSESELESVV 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03456 716 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 518 596 - -
Trre13g03456 716 SUPERFAMILY alpha-D-mannose-specific plant lectins 176 276 IPR036426 -
Trre13g03456 716 Gene3D - 28 157 IPR036426 -
Trre13g03456 716 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 597 692 - -
Trre13g03456 716 CDD B_lectin 47 158 IPR001480 -
Trre13g03456 716 SUPERFAMILY Protein kinase-like (PK-like) 459 684 IPR011009 -
Trre13g03456 716 SMART blect_4 37 158 IPR001480 -
Trre13g03456 716 ProSiteProfiles Protein kinase domain profile. 387 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g03456 716 Gene3D Transferase(Phosphotransferase) domain 1 519 596 - -
Trre13g03456 716 Gene3D Transferase(Phosphotransferase) domain 1 597 693 - -
Trre13g03456 716 ProSiteProfiles Bulb-type lectin domain profile. 31 156 IPR001480 -
Trre13g03456 716 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 28 157 - -
Trre13g03456 716 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 209 IPR036426 -
Trre13g03456 716 PANTHER OS07G0415500 PROTEIN 311 697 - -
Trre13g03456 716 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 414 517 - -
Trre13g03456 716 PIRSF SRK 594 715 IPR024171 GO:0004674
Trre13g03456 716 PIRSF SRK 1 312 IPR024171 GO:0004674
Trre13g03456 716 PIRSF SRK 310 598 IPR024171 GO:0004674
Trre13g03456 716 Gene3D - 158 276 IPR036426 -
Trre13g03456 716 Pfam D-mannose binding lectin 84 173 IPR001480 -
Trre13g03456 716 Gene3D Phosphorylase Kinase; domain 1 414 517 - -
Trre13g03456 716 Pfam S-locus glycoprotein domain 246 309 IPR000858 GO:0048544
Trre13g03456 716 ProSiteProfiles Bulb-type lectin domain profile. 159 277 IPR001480 -
Trre13g03456 716 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 158 276 - -
Trre13g03456 716 MobiDBLite consensus disorder prediction 695 716 - -
Trre13g03456 716 Pfam Protein tyrosine and serine/threonine kinase 466 591 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03456 Trre-Chr13 42303522 42305807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03456 402 684 Receptor kinase-like Gene Family AT3G45860 29.448 2.48e-37 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre13g03456 PK_Tyr_Ser-Thr 7.4e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03456 - - gmx:100809478 1116.29