Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03443 ATGAGCAGTAAAGAAGAATCAAAACCCAATTTAAATTTAACAACCACATCATCTAAATGGTCTTCAAGTCTTCTTGACTTGGCTTCTAAATTGAGTGGTGAAATTACCCAAGCATGGCATGGAATAGGACAGAGTAGTGGCAGTGGTAATGGAAATAATCAAGGGGAGAAGTGTCCATTATGTGATGCTAAGTTTTCCTCAGCAACTAGTTTGGTCGATCACGCGAAAAAAGTTCATCAAAGGAATGGCAGCAAGCGATATCGGGTAAAGAAGGTGTCGATCTCTGCATATCCGAAGTGTAGTAAAGGTTTTCTGGACCCGCTTTCACTCGTGGAACATGTCGAGAGGGATCATGGTGGTAGTTCTTGA 369 0.4173 MSSKEESKPNLNLTTTSSKWSSSLLDLASKLSGEITQAWHGIGQSSGSGNGNNQGEKCPLCDAKFSSATSLVDHAKKVHQRNGSKRYRVKKVSISAYPKCSKGFLDPLSLVEHVERDHGGSS 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03443 122 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 84 IPR013087 -
Trre13g03443 122 SMART c2h2final6 95 118 IPR013087 -
Trre13g03443 122 SMART c2h2final6 56 79 IPR013087 -
Trre13g03443 122 ProSitePatterns Zinc finger C2H2 type domain signature. 58 79 IPR013087 -
Trre13g03443 122 Pfam C2H2-type zinc finger 57 79 - -
Trre13g03443 122 Gene3D Classic Zinc Finger 51 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03443 Trre-Chr13 42172121 42172489 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03443 29 122 C2H2 Transcription Factor Family AT2G41835 45.745 1.33e-19 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre13g03443 zf-C2H2_4 0.00044 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03443 - - mdm:103423265 122.479