Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03439 ATGGGGACTCCTGAATTCCCAGATCTAGGCAAGCATTGTTCTGTTTCTGATTGCAGACTCATCGATTTCTTGCCCTTCACATGCGATCGATGTAATCAGGTATATTGTTTGGAGCACCGAAGTTATATTAAACATAATTGTACAAAACCCAACAAACATGATGTCACTGTTGTTATATGTCCACTTTGTGCCAAAGGGGTTCGTCTAATTCCTGATCATGATCCCAACATAGTTTGGGAGCTTCATGTCAACACAGATTGTGACCCATCAAATTATGAAAAAGTCACAAAAAAGAAAAAATGTCCTACCCCAGGATGCAGAGAGACCTTAGTATTCTCAAACACAATCAAGTGTAGAGACTGTGAGGTAGATCATTGCTTGAAACATAGGTTTGGACCTGATCATAAATGTTCTGGACCTAAAAAGTTGGAAACAAGTTTTTCATTTATGAGTCTTTTGAATATGAGTAGTAGTAAAGAAGAATCAAAACCCAATTTAAATTCAACAACCACATCATCTAAATGGTCTTCAAGTATTCTTGACTTGGCTTCTAAATTGGGTGGTGAAATTAACCAAGCATGGCATGGAATAGGACAGAGTAGTGGCAGTGGTAATGGAAATAATCAAGAGGAGAAGTGTCCATTATGTGATGCTAAATTTTCCTCGGCAACTAGTTTGGTGGATCACGCGAAAAAAGTTCATCAAAGGAATGGCAGCAAGCGACATGGGGTAAAGAAGGTGTCGATCTCTGCATGTCCGAAGTGTAGTAAAGGTTTTTTGGACCCGGTTTCACTTGTGGAACATGTCGAGAGGGATCATGGTGGTAGTTCTTGA 834 0.3957 MGTPEFPDLGKHCSVSDCRLIDFLPFTCDRCNQVYCLEHRSYIKHNCTKPNKHDVTVVICPLCAKGVRLIPDHDPNIVWELHVNTDCDPSNYEKVTKKKKCPTPGCRETLVFSNTIKCRDCEVDHCLKHRFGPDHKCSGPKKLETSFSFMSLLNMSSSKEESKPNLNSTTTSSKWSSSILDLASKLGGEINQAWHGIGQSSGSGNGNNQEEKCPLCDAKFSSATSLVDHAKKVHQRNGSKRHGVKKVSISACPKCSKGFLDPVSLVEHVERDHGGSS 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03439 277 ProSiteProfiles Zinc finger C2H2 type domain profile. 250 277 IPR013087 -
Trre13g03439 277 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Trre13g03439 277 SMART c2h2final6 211 234 IPR013087 -
Trre13g03439 277 SMART c2h2final6 250 273 IPR013087 -
Trre13g03439 277 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Trre13g03439 277 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Trre13g03439 277 FunFam AN1-type zinc finger protein 2B isoform X1 3 64 - -
Trre13g03439 277 ProSiteProfiles Zinc finger C2H2 type domain profile. 211 239 IPR013087 -
Trre13g03439 277 SUPERFAMILY AN1-like Zinc finger 93 143 IPR035896 -
Trre13g03439 277 Gene3D - 86 173 IPR035896 -
Trre13g03439 277 Gene3D - 2 60 IPR035896 -
Trre13g03439 277 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Trre13g03439 277 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Trre13g03439 277 ProSitePatterns Zinc finger C2H2 type domain signature. 213 234 IPR013087 -
Trre13g03439 277 ProSitePatterns Zinc finger C2H2 type domain signature. 252 273 IPR013087 -
Trre13g03439 277 Gene3D Classic Zinc Finger 190 276 - -
Trre13g03439 277 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 243 - -
Trre13g03439 277 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Trre13g03439 277 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03439 Trre-Chr13 42134982 42136594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03439 1 277 C2H2 Transcription Factor Family AT2G41835 59.722 3.87e-114 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre13g03439 zf-AN1 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03439 - - gmx:100806459 437.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03439 13 42134982 42136594 Trre13g03439 13 42134982 42136594 ECH
Trre13g03439 13 42134982 42136594 Trre1g02038 1 16235699 16238163 PCT