Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03434 ATGGAAGTTCTGTGCTTGTTGCATATTGTGTTAGGTTGGTATCTTTCAAATGTTGAGTTTGTTGTAGGTGCTGAGTTGCAGGACCAAGCTATAATACATGCAATCAATCAAGAGCTTAGAGTTCCTGAATGGAGTGATGCAAACATTTCAGATTACTGTAGTTGGCAAGGGGTTTTCTGTAGCAATCATTCAATGGTGGAGAAGCTTGATCTTTCTCACAAGAACCTTAGAGGTAATGTGACTTTAATGTCTGAACTCAAAAGTTTGAAGTTACTTGACCTTTCAAATAATAACTTTGGTGGATTGATTCCTCTTGCTTTTGGAACTTTATCTGAGCTTGAAGTTCTAGATTTGTCTTCTAATAAGTTTGAAGGTTCAATTCCATCACAGTTTGGTGGTCTAAGAAGCTTAAAATCATTAAACCTTTCTAATAATTTGCTTGTTGGTGAGTTTCCAATTGAACTTCATGGCTTAAAGAAATTGCAGGATTTGCAACTTTCTAGTAATCATTTGAGTGGTTTTATACCTTCTTGGGTGGGGAATTTAACCAATTTGAGAGTTTTTTCGGCTTATGAGAACCGTTTAGATGGTAGAATTCCAGATAATCTAGGCTTGATTCCTGAACTTCAAATACTTAACCTGCATTCTAACCAGCTTGAAGGTCCAATACCATCGAGCATTTTCGCTACGGGAAAGCTAGAAGTTCTGGTTCTCACACAGAATAATTTTAGTGGTGATCTTCCTGAGGAAATTGGCAACTGTCATGCTCTTTCAAGCATTAGAATTGGAAACAACCATCTTGTAGGTAGCATTCCTAAGACCATTGGAAATCTTAGTAGCCTAACATACTTTGAAGCCGATAATAATAATCTTTCTGGTGAGCTAGTGTCGGAATTTGCTCGGTGTTCTAACCTCACCCTCTTGAATTTAGCTTCAAATGGATTTTCTGGGACGATTCCGCAGGAGTTTGGACAACTTATGAACCTTCAGGAATTGATTTTGTCTGGAAATAGCCTATTTGGTGATATTCCAAAACCAATTCTCAGTTGCAAAAGTCTCAACAAGCTTGATATTAGCAACAACAGATTCAACGGGACAATACCGAGTGGAATCTGCAACATTTCTCGGTTGCAGTACTTGATATTGAATCTGAATTCCATAAGAGGAGAGATCCCTCACGAAATTGGAAGTTGTGTAAAACTTCTTGAGTTGCAATTGGGGAGTAATTATTTAACTGGAACTATTCCTCCCGAGATTGGCCGCATCAGAAACTTGCAGATAGCTTTAAATTTGAGCTTCAATCATCTCCATGGATTACTGCCGCCAGAATTGGGAAAACTCGACAAACTTGTTTCTCTCGATGTTTCAAACAATCGGTTATCAGGTAATATCCCAGCTGAGCTTAAGGGAATGTTGAGCCTGATAGAGGTGAATTTCTCGAATAATCTGTTGGAAGGCCCTGTACCAACATTCATTCCATTCCAGAAAAGTCCTACTTCGAGTTTTTTAGGCAATATAGGACTTTGTGGAGACCCATTGAACTCTTCATGTGGAGATATTTATGATGATCACAATAGTTACCATCACAAGGTTTCTTACAGAATCATACTGGCCGTAATTGGTTCTGGTTTGGCAGTTTTTGTGTCGGTAACAATAGTTGTCATGCTGTTTATGATCAGAGAGAGGCAAGAAAAAGCAGCCAAAGAGGCTGCCGGTATTGTTGATGATCTAACCAATGACAAACCAACTATAATAGCAGGGACTGTTTTTGTCGATAATCTAAAACAAGCAGTGGACCTTGAAGCCGTTGTTAACGCAACAATGAAAGACTCGAATAAGATCAGCAGTGGAACTTTCAGCTCAGTTTACAAAGCAACCATGCCTTCTGGTGTGGTCTTATCGGTTAGGAGACTGAAATCTGTGGACAAGACAATAATCCACCATCAGAACAAGATGATTCGAGAACTTGAAAGGCTAAGCAAAGTTTGTCACGATAATCTTGTGCGACCTATTGGCTATGTCATTTATGAAGATGTTGCTCTTCTCTTGCATAATTATTTTCCTAATGGAACATTATCTCAGCTTCTTCATGAATCTACCAAGCAACCTGAATATCAGCCTGATTGGCCAGCTAGGCTATCCATTGCCATCGGTGTCGCAGAAGGTTTGGCTTTCCTTCATCATGTCGCAATTATCCATCTTGACATTTCTTCTGGAAATGTTCTTTTGGATGCAAATTTCAAACCACTGGTTGGAGAGATTGAAATTTCAAAACTTTTGGATCCAACCAGAGGCACCGGAAGTATTAGCGCAGTTGCAGGTTCCTTCGGTTACATACCACCAGAATATGCATACACCATGCAAGTGACAGCACCAGGAAATGTTTACAGCTATGGTGTTGTTTTGCTGGAAATCCTTACAACTCGACAACCTGTTGAAGAAGATTTTGGCGAAGGTGTAGATTTGGTGAAGTGGGTTCATAGTGCTCCTGTAAGAGGGGAAACTCCAGAGCAGATACTTGATGCAAGACTTAGCACGGTTTCCTTTGGTTGGAGGAAAGAAATGCTTGCTGCTCTAAAGGTTGCGTTGCTTTGCACCGACAACACACCAGCCAAACGACCGAAAATGAAGAATGTTGTAGAAATGCTACGGGAAATCAAGTAA 2664 0.3986 MEVLCLLHIVLGWYLSNVEFVVGAELQDQAIIHAINQELRVPEWSDANISDYCSWQGVFCSNHSMVEKLDLSHKNLRGNVTLMSELKSLKLLDLSNNNFGGLIPLAFGTLSELEVLDLSSNKFEGSIPSQFGGLRSLKSLNLSNNLLVGEFPIELHGLKKLQDLQLSSNHLSGFIPSWVGNLTNLRVFSAYENRLDGRIPDNLGLIPELQILNLHSNQLEGPIPSSIFATGKLEVLVLTQNNFSGDLPEEIGNCHALSSIRIGNNHLVGSIPKTIGNLSSLTYFEADNNNLSGELVSEFARCSNLTLLNLASNGFSGTIPQEFGQLMNLQELILSGNSLFGDIPKPILSCKSLNKLDISNNRFNGTIPSGICNISRLQYLILNLNSIRGEIPHEIGSCVKLLELQLGSNYLTGTIPPEIGRIRNLQIALNLSFNHLHGLLPPELGKLDKLVSLDVSNNRLSGNIPAELKGMLSLIEVNFSNNLLEGPVPTFIPFQKSPTSSFLGNIGLCGDPLNSSCGDIYDDHNSYHHKVSYRIILAVIGSGLAVFVSVTIVVMLFMIRERQEKAAKEAAGIVDDLTNDKPTIIAGTVFVDNLKQAVDLEAVVNATMKDSNKISSGTFSSVYKATMPSGVVLSVRRLKSVDKTIIHHQNKMIRELERLSKVCHDNLVRPIGYVIYEDVALLLHNYFPNGTLSQLLHESTKQPEYQPDWPARLSIAIGVAEGLAFLHHVAIIHLDISSGNVLLDANFKPLVGEIEISKLLDPTRGTGSISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTTRQPVEEDFGEGVDLVKWVHSAPVRGETPEQILDARLSTVSFGWRKEMLAALKVALLCTDNTPAKRPKMKNVVEMLREIK 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03434 887 Gene3D Ribonuclease Inhibitor 175 274 IPR032675 -
Trre13g03434 887 Gene3D Ribonuclease Inhibitor 27 174 IPR032675 -
Trre13g03434 887 FunFam Nuclear pore complex protein NUP107 30 177 - -
Trre13g03434 887 ProSitePatterns Tyrosine protein kinases specific active-site signature. 731 743 IPR008266 GO:0004672|GO:0006468
Trre13g03434 887 Gene3D Phosphorylase Kinase; domain 1 577 686 - -
Trre13g03434 887 Gene3D Transferase(Phosphotransferase) domain 1 687 887 - -
Trre13g03434 887 Gene3D Ribonuclease Inhibitor 275 517 IPR032675 -
Trre13g03434 887 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 578 686 - -
Trre13g03434 887 CDD STKc_IRAK 614 886 - -
Trre13g03434 887 ProSiteProfiles Protein kinase domain profile. 608 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g03434 887 Pfam Leucine rich repeat 88 147 IPR001611 GO:0005515
Trre13g03434 887 SUPERFAMILY Protein kinase-like (PK-like) 609 884 IPR011009 -
Trre13g03434 887 SMART LRR_typ_2 86 109 IPR003591 -
Trre13g03434 887 SMART LRR_typ_2 374 398 IPR003591 -
Trre13g03434 887 SMART LRR_typ_2 326 350 IPR003591 -
Trre13g03434 887 SMART LRR_typ_2 447 470 IPR003591 -
Trre13g03434 887 SMART LRR_typ_2 110 133 IPR003591 -
Trre13g03434 887 SMART LRR_typ_2 134 157 IPR003591 -
Trre13g03434 887 SMART LRR_typ_2 206 230 IPR003591 -
Trre13g03434 887 SMART LRR_typ_2 158 182 IPR003591 -
Trre13g03434 887 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 687 887 - -
Trre13g03434 887 SUPERFAMILY L domain-like 201 517 - -
Trre13g03434 887 PRINTS Leucine-rich repeat signature 89 102 - -
Trre13g03434 887 PRINTS Leucine-rich repeat signature 110 123 - -
Trre13g03434 887 SUPERFAMILY L domain-like 37 293 - -
Trre13g03434 887 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 226 520 - -
Trre13g03434 887 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 257 884 - -
Trre13g03434 887 Pfam Protein tyrosine and serine/threonine kinase 611 883 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03434 Trre-Chr13 42083645 42086398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03434 1 887 Receptor kinase-like Gene Family AT2G41820 72.103 0.0 1286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre13g03434 PK_Tyr_Ser-Thr 5e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03434 - - adu:107492611 1512.28