Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03426 ATGATGGATACTTGCAAGAAATCTCCCTTGAAGCCATGGAAGAAAGGGCCAACCAGGGGGAAAGGTGGCCCTCAAAATGCTTCGTGTGAGTATCGAGGTGTTCGTCAAAGAACGTGGGGCAAATGGGTTGCTGAGATAAGAGAGCCAAAGAAGAGAACTAGACTCTGGCTTGGTTCTTTCGCAACTGCGGAAGAAGCTGCCATGGCTTATGATGAGGCTGCAAGGAGACTCTATGGACCAGATGCATACCTCAATCTTCCACACTTGCAACCACACTCGGTTTCGTCTATCAAAACTGGAAAGTTCAAGTGGTTGCCTTCGAAGAATTTTATTTCAATGTTTCCTTCTTGTGGATTACTCAATGTAAATGCTCAACCTAGTGTTCATTTAATCCATCAGAGGCTACAAGAGTTTAAGCAGAATGCAGTTGCTGCAAGTCAATCATCACTTTCTAGTTCATCTAATGATCCAAAGGCAGAAGAAATTCAGAATGTAGAGAGCAACAAGAATCATGCAGAAAATCCTCCAAAGGAAAAAGATGTTCAAATATCGGCGAATAAGATGTTTGGAGATTTTCAAGAGGAGAAACCACAGATAGACCTACATGAGTTTCTTCAACAGATGGGAATACTGAAAGAAGAAACACACTCGGAGCAAACTGAGAGTTCAGGAAGTTCAACAGTGCATGAAGCTGTGTCAAAAGATGATAATAATCAATTAGGAATATTTTCTGACACGAGTGTTAATTGGGAGGCATTGATCGAGATGCATGGATTTGCAGATATTCCGGAATCAGAAGCCACACAGCTCGAAGCATATGACCCGAATGACGACCACCTTAATTTCTCAACTTCCATTTGGAACTTTTAA 870 0.4184 MMDTCKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHLQPHSVSSIKTGKFKWLPSKNFISMFPSCGLLNVNAQPSVHLIHQRLQEFKQNAVAASQSSLSSSSNDPKAEEIQNVESNKNHAENPPKEKDVQISANKMFGDFQEEKPQIDLHEFLQQMGILKEETHSEQTESSGSSTVHEAVSKDDNNQLGIFSDTSVNWEALIEMHGFADIPESEATQLEAYDPNDDHLNFSTSIWNF 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03426 289 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 5 252 - -
Trre13g03426 289 SUPERFAMILY DNA-binding domain 30 88 IPR016177 GO:0003677
Trre13g03426 289 CDD AP2 29 89 IPR001471 GO:0003700|GO:0006355
Trre13g03426 289 Pfam AP2 domain 29 79 IPR001471 GO:0003700|GO:0006355
Trre13g03426 289 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Trre13g03426 289 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Trre13g03426 289 MobiDBLite consensus disorder prediction 146 181 - -
Trre13g03426 289 FunFam Ethylene-responsive transcription factor 2 29 88 - -
Trre13g03426 289 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Trre13g03426 289 MobiDBLite consensus disorder prediction 146 161 - -
Trre13g03426 289 Gene3D AP2/ERF domain 30 88 IPR036955 GO:0003700|GO:0006355
Trre13g03426 289 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Trre13g03426 289 MobiDBLite consensus disorder prediction 1 28 - -
Trre13g03426 289 MobiDBLite consensus disorder prediction 162 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03426 Trre-Chr13 41940578 41941447 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03426 6 289 AP2-EREBP Transcription Factor Family AT3G57600 51.701 2.56e-88 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre13g03426 AP2 2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03426 - - gmx:100801311 452.981