Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03398 ATGATTGGCGACTCTGCTTTCAATGTAGCTGCTAGCAACCCAACCAACACAGTCTTTGATGCAAAGAGGCTAATTGAAGCTTACTTGGGATCAACAATGAATGATGTTGTTATAACTGTGCCTGCTTACTTCAATAACTCGCAAAGACAAGCTACTAGAGATGCAGGCGGTGGTACATTGGATGTATCGATAGTGTATTCAGCTGCAACAGGTGACATCACCGGATTAACTTCTTCTATAATTGGTGACTTCTGTTCGTCAAAGAATAAAAACATTCTGTAA 282 0.4043 MIGDSAFNVAASNPTNTVFDAKRLIEAYLGSTMNDVVITVPAYFNNSQRQATRDAGGGTLDVSIVYSAATGDITGLTSSIIGDFCSSKNKNIL 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03398 93 PANTHER HEAT SHOCK PROTEIN 70KDA 26 56 IPR013126 GO:0005524|GO:0140662
Trre13g03398 93 SUPERFAMILY Actin-like ATPase domain 2 56 IPR043129 -
Trre13g03398 93 Gene3D - 1 60 - -
Trre13g03398 93 FunFam heat shock 70 kDa protein-like 1 85 - -
Trre13g03398 93 Pfam Hsp70 protein 26 56 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03398 Trre-Chr13 41592094 41601333 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03398 22 56 Calmodulin-binding Proteins AT3G09440 65.714 1.88e-11 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03398 K03283 - smin:v1.2.025480.t1 70.4774