Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03387 ATGGCTTCGTCTTCCTCCGATCACGGAAAATCTGCGGAAAACTCAGAAGCTCTGGCGGTTGCGAACGATCAGCTTTTACTGTACCGAGGATTGAAGAAAGCGAAGAAAGAGAGAGGTTGTACTGCTAAAGAACGAATCAGTAAAATGCCTCCGTGTGCCGCCGGTAAACGTAGCTCCATCTACCGTGGTGTCACCAGGCATAGATGGACTGGTCGATATGAAGCGCATCTATGGGATAAAAGTACATGGAACCAGAATCAGAATAAGAAAGGAAAGCAAGTTTACTTGGGGGCTTATGATGATGAGGAAGCAGCAGCTAGAGCGTATGATCTTGCTGCTCTCAAATATTGGGGTCCTGGGACTCTTATTAATTTCCCGGTGACTGATTATACAAGAGATCTCGAAGAAATGCAGAACGTTTCAAGAGAAGAATACCTTGCATCTTTGCGACGGAAGAGCAGTGGTTTTTCAAGAGGACTAGCAAAATATCGTGGACTCTCCAGACGATGGGAGCCATCATATGGCCGATTGACCGGATCGGATTACTTCAGTAGTGTGCATTATGGTACTGGGGATGATTCAGCTGCGGAAAGTGAATATGTTAGTGGTTTCTGTATAGAAAGAAAGATTGATTTAACAAATCACATAAAATGGTGGGGATCTAATAAGAATCGACAACCTGATGCTGGAACAAGATTATCAGAAGAAAAGAAACATGGTTTTGCCGGAGGAGATATTTACAGTGAACTGAAAACATTGGAACAGAAAGTCCAACCGACAGAACCATACAAGTTGCCAGAGTTAGGACGGCTCCACAATGAGAAAAAACATAAAAGTTCTTCAATGTCTGCCTTAAGTATATTGTCACAGTCTTCTGCTTACAAGAGCATGCAAGAGAAAGTGGCAAAAAGACAGGAAAATAGCACTGATAATGACGAGAATGAAAACAAAAATATAGTCAATGAGTTGGATCGTGGAAAGGCAGTAGAAAAACCCTCAAATCATGATGGTGGCAATGATCGACTTGACATTGCAATGGGAATGAGTGGGGCATTGTCTCTTCAAAGAAATGTTTACCCATTGACACCATTCTTATCTGCACCACTTATGACAACGTACAACACTGTTGATCCATTGGTTGATCCTGTTCTCTGGACATCGCTCGTTCCAATGCTTCCTGCCAGCCTTTCTCGTCCTGCTGAGGTTACAAAGACCGAGACCGATTCAACATACACTATGTATCAGCCAGAGGAGTGA 1257 0.4312 MASSSSDHGKSAENSEALAVANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGLAKYRGLSRRWEPSYGRLTGSDYFSSVHYGTGDDSAAESEYVSGFCIERKIDLTNHIKWWGSNKNRQPDAGTRLSEEKKHGFAGGDIYSELKTLEQKVQPTEPYKLPELGRLHNEKKHKSSSMSALSILSQSSAYKSMQEKVAKRQENSTDNDENENKNIVNELDRGKAVEKPSNHDGGNDRLDIAMGMSGALSLQRNVYPLTPFLSAPLMTTYNTVDPLVDPVLWTSLVPMLPASLSRPAEVTKTETDSTYTMYQPEE 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03387 418 Gene3D AP2/ERF domain 60 128 IPR036955 GO:0003700|GO:0006355
Trre13g03387 418 Pfam AP2 domain 60 118 IPR001471 GO:0003700|GO:0006355
Trre13g03387 418 MobiDBLite consensus disorder prediction 261 284 - -
Trre13g03387 418 MobiDBLite consensus disorder prediction 296 341 - -
Trre13g03387 418 SUPERFAMILY DNA-binding domain 59 127 IPR016177 GO:0003677
Trre13g03387 418 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Trre13g03387 418 PRINTS Ethylene responsive element binding protein signature 108 128 IPR001471 GO:0003700|GO:0006355
Trre13g03387 418 ProSiteProfiles AP2/ERF domain profile. 60 126 IPR001471 GO:0003700|GO:0006355
Trre13g03387 418 SMART rav1_2 60 132 IPR001471 GO:0003700|GO:0006355
Trre13g03387 418 MobiDBLite consensus disorder prediction 299 338 - -
Trre13g03387 418 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12 304 - -
Trre13g03387 418 FunFam AP2-like ethylene-responsive transcription factor 59 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03387 Trre-Chr13 41363370 41367169 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03387 19 416 AP2-EREBP Transcription Factor Family AT2G41710 63.415 5.69e-173 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre13g03387 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03387 K09285 - gmx:100814117 716.072