Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03386 ATGGCTTCGTCTTCCTCCGATCACGGAAAATCTGCGGAAAACTCAGAAGCTCTGGCGGTTGCGAACGATCAGCTTTTACTGTACCGAGGATTGAAGAAAGCGAAGAAAGAGAGAGGTTGTACTGCTAAAGAACGAATCAGTAAAATGCCTCCGTGTGCCGCCGGTAAACGTAGCTCCATCTACCGTGGTGTCACCAGGCATAGATGGACTGGTCGATATGAAGCGCATCTATGGGATAAAAGTACATGGAACCAGAATCAGAATAAGAAAGGAAAGCAAGGGGCTTATGATGATGAGGAAGCAGCAGCTAGAGCGTATGATCTTGCTGCTCTCAAATATTGGGGTCCTGGGACTCTTATTAATTTCCCGGTGACTGATTATACAAGAGATCTCGAAGAAATGCAGAACGTTTCAAGAGAAGAATACCTTGCATCTTTGCGACGGAAGAGCAGTGGTTTTTCAAGAGGACTAGCAAAATATCGTGGACTCTCCAGACGATGGGAGCCATCATATGGCCGATTGACCGGATCGGATTACTTCAGTAGTGTGCATTATGGTACTGGGGATGATTCAGCTGCGGAAAGTGAATATGTTAGTGGTTTCTGTATAGAAAGAAAGATTGATTTAACAAATCACATAAAATGGTGGGGATCTAATAAGAATCGACAACCTGATGCTGGAACAAGATTATCAGAAGAAAAGAAACATGGTTTTGCCGGAGGAGATATTTACAGTGAACTGAAAACATTGGAACAGAAAGTCCAACCGACAGAACCATACAAGTTGCCAGAGTTAGGACGGCTCCACAATGAGAAAAAACATAAAAGTTCTTCAATGTCTGCCTTAAGTATATTGTCACAGTCTTCTGCTTACAAGAGCATGCAAGAGAAAGTGGCAAAAAGACAGGAAAATAGCACTGATAATGACGAGAATGAAAACAAAAATATAGTCAATGAGTTGGATCGTGGAAAGGCAGTAGAAAAACCCTCAAATCATGATGGTGGCAATGATCGACTTGACATTGCAATGGGAATGAGTGGGGCATTGTCTCTTCAAAGAAATGTTTACCCATTGACACCATTCTTATCTGCACCACTTATGACAACGTACAACACTGTTGATCCATTGGTTGATCCTGTTCTCTGGACATCGCTCGTTCCAATGCTTCCTGCCAGCCTTTCTCGTCCTGCTGAGGTTACAAAGACCGAGACCGATTCAACATACACTATGTATCAGCCAGAGGAGTGA 1248 0.4319 MASSSSDHGKSAENSEALAVANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGLAKYRGLSRRWEPSYGRLTGSDYFSSVHYGTGDDSAAESEYVSGFCIERKIDLTNHIKWWGSNKNRQPDAGTRLSEEKKHGFAGGDIYSELKTLEQKVQPTEPYKLPELGRLHNEKKHKSSSMSALSILSQSSAYKSMQEKVAKRQENSTDNDENENKNIVNELDRGKAVEKPSNHDGGNDRLDIAMGMSGALSLQRNVYPLTPFLSAPLMTTYNTVDPLVDPVLWTSLVPMLPASLSRPAEVTKTETDSTYTMYQPEE 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03386 415 MobiDBLite consensus disorder prediction 293 338 - -
Trre13g03386 415 Gene3D AP2/ERF domain 60 125 IPR036955 GO:0003700|GO:0006355
Trre13g03386 415 MobiDBLite consensus disorder prediction 296 335 - -
Trre13g03386 415 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12 301 - -
Trre13g03386 415 ProSiteProfiles AP2/ERF domain profile. 60 123 IPR001471 GO:0003700|GO:0006355
Trre13g03386 415 SUPERFAMILY DNA-binding domain 59 124 IPR016177 GO:0003677
Trre13g03386 415 FunFam AP2-like ethylene-responsive transcription factor 59 125 - -
Trre13g03386 415 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Trre13g03386 415 PRINTS Ethylene responsive element binding protein signature 105 125 IPR001471 GO:0003700|GO:0006355
Trre13g03386 415 MobiDBLite consensus disorder prediction 258 281 - -
Trre13g03386 415 SMART rav1_2 60 129 IPR001471 GO:0003700|GO:0006355
Trre13g03386 415 Pfam AP2 domain 60 115 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03386 Trre-Chr13 41363370 41367169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03386 19 413 AP2-EREBP Transcription Factor Family AT2G41710 62.683 2.83e-168 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre13g03386 AP2 2.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03386 K09285 - gmx:100814117 704.901