Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03379 ATGATGCAGGGAAGTGGAGAATTAACAGTTCCCTCAGGATTCAGGTTCCACCCCACTGATGAGGAGCTTCTTTACTATTATTTAAGGAGGAAAGTTTCTTATGACGCCATTGATCTTGATGTTATTAGAGAAGTTGATCTCAATAGACTTGAGCCTTGGGATCTCAAAGGCAGGAATTGGTATAGCAGAGCTAATTGCTCTTTAGATATCAAAACAGACTAA 222 0.3964 MMQGSGELTVPSGFRFHPTDEELLYYYLRRKVSYDAIDLDVIREVDLNRLEPWDLKGRNWYSRANCSLDIKTD 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03379 73 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 10 62 - -
Trre13g03379 73 ProSiteProfiles NAC domain profile. 10 73 IPR003441 GO:0003677|GO:0006355
Trre13g03379 73 Pfam No apical meristem (NAM) protein 11 59 IPR003441 GO:0003677|GO:0006355
Trre13g03379 73 SUPERFAMILY NAC domain 5 61 IPR036093 GO:0003677|GO:0006355
Trre13g03379 73 Gene3D NAC domain 19 68 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03379 Trre-Chr13 41300823 41301752 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03379 2 56 NAC Transcription Factor Family AT1G79580 76.364 1.60e-26 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre13g03379 NAM 6.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03379 - - vun:114178728 108.997