Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03372 ATGGGAACCGCTTCAAGACAGTTAAAGGTTATGCTCAGAAAAAATTGGCTCCTCAAAAAACGCCACCCGTTCGTTACTGCTGCTGAGATTTTGCTACCGGCGATTGTGTTGTTGCTATTAGCAGCTGTAAGAACGCGAGTCGATACACAAATTCATCCTGCTCAATCGCACATTCAGAAAGATATGTTTGTAGAAGTGGGGAAAGGTATATCCCCTAACTTTCAACAAGTTTTGGAATCCTTATTGGATAAGAGAGAATATTTAGCTTTTGCACCAGACACCAATGAAACAAGGATGATGATAGACGTCGTGTCGATCAATTTTCCGATTTTGAAGCTTGTTAGTATTGTATACAAAGATGAGTTAGAGTTGGAAACATACATCCGATCAGATGCTTATGGTACCTGCAATGACGTAAGGAATTGTTCGAATCCCAAAATTAAAGGTGCAATTGTATTTTACGAACAAGGTCCTCAGTTATTTGATTATAGCATACGCCTCAATCATACATGGGCTTTCTCCGGTTTTCCGGATGTTACAACAATAATGGATACAAATGGCCCTTTTCTTAATGACTTGGAACTTGGTGTTAGCTCTGTACCAACAATGCAGTACAGCTTCAGTGGATTTTTGACACTCCAGCAAATGGTTGATTCGTTCATAATATTAACGGCTCAACAACCTGAATTACAGTCAAATGCCAAAACTGTAAAACTTCCTCTTCTAGAACTTAGTGACACTGATGTCTCCCTAAAAGTTCCATGGACTCAGTTTATCCCTACCAACATACGAATAGCTCCATTTCCCACTCGAGAGTACACTGATGACCAGTTCCAGGCAATAGTGAAGGAAGTCATGGGAATATTGTATTTACTGGGCTTTCTCTATCCAGTTTCTCGCCTGATAAGTTATTCTGTGTTTGAGAAGGAACAAAAGATCAAAGAAGGACTCTATATGATGGGCTTAAAAGATGGCATATTTCATCTCTCTTGGTTTATCACATATGCTTTGCAGTTTGCAATTTCTGCTGCGGTCATTACAGCTTGCACCATGGATAATATATTCAAGTATAGTGATAAGACACTGGTGTTTGCATACTTCTTCATTTTTGGGCTTAGTGCAATCATGCTGTCATTTTTTATATCAACATTTTTCAAAAGGGCCAAAACAGCTGTAGCTGTTGGAACGATGTCATTTCTTGGTGCCTTTTTACCTTATTACACTGTCAACGATGAGGGAGTCTCTATGATCTTGAAGGTTCTTGCTTCTCTGCTTTCGCCTACGGCATTTGCTCTGGGTTCTATAAACTTTGCTGATTATGAGCGTGCTCATGTTGGGCTTCGTTGGAGCAACATATGGCGGGAGTCCTCTGGAGTGAACTTCTCCGCATGTCTTCTGATGATGATACTTGATACACTGCTCTATTGTGCAATTGGCCTCTATTTCGATAAGGTTCTTCCAAGGGAGTATGGACTGCGATATCCATGGAACTTTATTTTCAAAAAGGACTTCTGGAGAAAGAAAAAAGTTGTAAATAATTGTTCCTCCGGTTTTAAAGTTAAAACTGCTGGTAAGAGTTCTGAGTCAGAAGGGAATCTTTTGGGGCAAGATACTTCCAATCCTGCTATAGAAGCAATAAGCTTAGACATGAAACAACAGGAGATTGATGGCAGGTGTATTCAAATTAGGAATTTGCATAAAGTGTATGCTACTAAAAAAGGAGATTGCTGTGCTGTTAACTCATTACAGCTGACATTATATGAAAATCAGATTCTTGCTCTTCTAGGACATAATGGAGCTGGGAAAAGCACAACAATATCAATGCTTGTTGGTCTTCTTCCTCCTACTTCTGGGGATGCTTTGGTTTTTGGAAAGAACATTGTCTCCGATATTGATGAGATACGGAAGGTTTTGGGTGTCTGCCCACAACATGATATACTCTTTCCTGAATTGACGGTGAAAGAACATTTAGAACTATTTGCAATATTGAAGGGTGCAGAGGAAGACACATTGGAGACCGTTATTATTAATATGGCTGATGAGGTGGGCCTGGCTGATAAAATCAACACCGTCGTGAGATCTCTTTCTGGTGGGATGAAGAGGAAATTGTCTCTTGGAATTGCGTTGATTGGAAATAGTAAGGTTATAATTCTTGATGAGCCTACAAGTGGAATGGATCCATACTCGATGCGTTTGACTTGGCAGTTAATAAAAAAAATCAAGAAGGGCAGGATAATTTTGCTAACAACACATTCTATGGATGAAGCAGATGAACTAGGTGACCGGATAGCTATCATGGCCAATGGTTCTCTGAAATGCTGTGGAAGCTCCCTTTTCTTGAAGCATCATTATGGAGTCGGATACACGCTAACTCTCGTAAAGTCCGCTCCTACTGCTTCTATAGCTGGTGATATTGTATACCGATATATTCCGACAGCAACCTGTATAAGCGAGGTTGGAACTGAGATTTCCTTCAGGCTCCCTATGGCATCCTCCTCAACCTTTGAGAGGATGTTCAGGGAAATTGAAGGTTGCATGAAAAAGACAGTTTTGAGCATGGAAATAAGTGGCAGTTGTGAAAAAGACAGTTATGGTATTGAAAGTTATGGTATATCTGTAACAACCCTTGAGGAGGTATTCTTGAGAGTTGCTGGATGTGACTATGATGAAGTTGAATGTTTTGAAGAAAATAACCGTTCCCTTATATCAGAATCTGTGGTTTCTGTTCCTTCTAATGATCTCCCATCAACAAAAATATGTTATTATAAAGTTTTTGGAAATTATAAGAAGATTATTGGCTTCATGTCTACCATGGTTGGGAGAGCCTGTGATATAATTTTTGCTGCAGTTATTAGTTTCATCAACTTCATAGGCCTGCAGTGTTGTAGCTGTTGTCTCATTACTACGTCCACCTTTTGGCAACATTCTAAAGCTTTATTTATTAAGAGGGCGATATCTGCTCGGAGAGATCACAAAACAATTATGTTTCAGCTACTGATTCCCGCTATCTTCTTGTTTATTGGTCTTCTATTTATGGAGCTCAAGCCACATCCAGATCAGATTCCACTGACTCTTTCAACTTCTTATTTTAATCCTCTATTGAGTGGTGGGGGTGGGGGTGGTCCAATTCCGTTCAATCTATCTTTTCCAATTGCTGAAAAGGTGGCACAAAATGTCAAAGGAGGTTGGATTCAAAGGTGCAACCCAAGCTCATACAAATTCCCCAATTCAGAAAAAGCATTAGCTGATGCAGTGGAAGCAGCAGGGCCAACTTTGGGACCTTCTCTACTTTCAATGAGTGAATATTTGATGTCTAGCTTTAATGAATCCTACCAATCGAGGTATGGGGCAATTGTGATGGATGATCAGAACACGGATGGAAGCTTAGGCTACACTGTATTACACAACTTTTCTTGTCAACATGCTGCTCCCACCTTTATCAATCTGATGAATTCTGCAATTCTTAGACTTGCTAGTCATAACATGAATGCAACAATTCAGACACGCAACCATCCTCTGCCAATGACTCAAAGCCAGCACTTACAACGTCATGATCTGGATGCCTTCTCTGCTGCTATCATTGTCAATATAGCATTCTCTTTCATTCCTGCCTCATTTGCTGTTTCAATTGTTAAGGAACGTGAAGTGAAAGCTAAGCACCAACAACTAATCAGCGGGGTTTCAGTCCTTTCATATTGGGCCTCTACATTTATTTGGGACTTTGTCAGCTTCTTGTTTCCGGCCTCTTTCGCCATAGTTCTTTTTTACATCTTTGGTTTGGATCAGTTTGTTGGAGGAGTTTCTTTGTTACCCACGATCATTATGCTTTTGGAATATGGACTTGCAATTGCATCGTCAACTTATTGCCTTACATTTTTCTTTTTTGACCATACTGTGGCTCAGAATGTGGTTCTTCTGGTGCACTTTTTTTCTGGATTGATACTGATGGTTATCTCATTCATTATGGGACTCATCCCATCCACAATAAGTGCCAATTCTTTTCTTAAGAACTTTTTCAGAATATCTCCTGGATTTTGTTTTGCTGATGGACTTGCTTCATTAGCTCTTCTGCGGCAAGGAATGAAAGATAAAACAAGTGATGGAGTATATGACTGGAATGTTACGGGTGCCTCCATTTGTTATCTTGCTATTGAGAGCGTTATTTATTTTTTATTGACACTCGGGCTTGAAATTTTTCCTTCACTCAAGTCGACTCCATTCACGATGAAGAAGTGGTGGCGTAAAATTAATATTTTCCCACGCAATACTACTTATCTGGAACCTTTATTAGAACCTTCTCCAGAAACTATATTTACGGACCTCAACGAAGACGTGGATGTGAAAACAGAAAGAAGTAGAGTACTCTCTGGTTCCGTTGACAATGCCATTATCTACTTGCGCAATCTTCGCAAGGTGTATTCTGAAGAGAAGAAACATGGGAAAAAGGTTGCAGTAGATTCATTAACCTTCTCAGTTCAGGAAGGAGAATGTTTTGGCTTTTTAGGAACAAATGGAGCTGGAAAGACCACAACACTTTCTATGCTATGCGGGGAAGAATCTCCTTCTGATGGGACAGCTTTTATTTTTGGCAAAGATATATGTTCCCATCCCAAGGCTGCTCGTAAATATATTGGATATTGTCCACAATTTGATGCTCTGTTGGAATTCTTAACTGTCAAAGAGCATCTTGAGCTCTATGCTAGAATAAAAAGTGTTCCAGACTACACAATAGACAATGTTGTTATGGAAAAGCTGGTGGAGTTTGACTTATTGAAGCATGCTAATAAACCATCATTTTCACTTAGTGGAGGGAATAAAAGAAAACTATCCGTTGCAATTGCAATGATTGGAGATCCTCCTATTGTCATTCTTGATGAACCATCCACAGGAATGGATCCCATTGCCAAAAGATTCATGTGGGATGTAATATCTAGAATCTCAACTAGACGAGGAAAGACTGCAGTCATTCTTACCACCCATAGCATGAATGAAGCTCAAGCCTTGTGTACCAGAATAGGCATTATGGTTGGTGGGCAACTAAGATGCATTGGAAGTCCGCAGCATCTGAAAACAAGATTTGGCAATCATCTAGAACTAGAGGTAAAACCTACTGAAGTGAGCTCTGTGGACTTGCAAACACTCTGCCAAGCTATTCAGGAAATGCTTTTTGATGTCCCTTCTCAACCTAGAAGCTTACTTAATGACCTTGAAATTTGTATTGGAGGTGCTGACTCTGGCGCCTCAGGAAATATCTCCATTGCAGAGATTAGCTTGACATCCGAGATGATAGGCTTAATTGGACGCTGGCTTGGCAACGAAGAAAGAGTGAAGACTCTAATGCGCTGTACACCTGTCTGTGAAGGGGCCTCTCAGGAACAGTTATCCGAACAATTATTTCGAGATGGAGGTATTCCATTGCCCGTGTTTTCTGAGTGGTGGTTGTCTAAACAAAAATTCTCAGAAATTGACTCATTTATTCTATCTTCATTTTGTGGAGCAAGATGCCAGGGATACAATGGTTTAAGCATCAGATACCAGTTACCTTGTGATGAGGACTTTTCCCTGGCAGATGTTTTTGGACTTCTTGAAGCAAATAGAGATAGATTAGGAATTGCAGAGTACAGCCTCAGCCAATCGACTCTAGAGACCATATTTAATCATTTTGCAGCTAATTCATGA 5679 0.4002 MGTASRQLKVMLRKNWLLKKRHPFVTAAEILLPAIVLLLLAAVRTRVDTQIHPAQSHIQKDMFVEVGKGISPNFQQVLESLLDKREYLAFAPDTNETRMMIDVVSINFPILKLVSIVYKDELELETYIRSDAYGTCNDVRNCSNPKIKGAIVFYEQGPQLFDYSIRLNHTWAFSGFPDVTTIMDTNGPFLNDLELGVSSVPTMQYSFSGFLTLQQMVDSFIILTAQQPELQSNAKTVKLPLLELSDTDVSLKVPWTQFIPTNIRIAPFPTREYTDDQFQAIVKEVMGILYLLGFLYPVSRLISYSVFEKEQKIKEGLYMMGLKDGIFHLSWFITYALQFAISAAVITACTMDNIFKYSDKTLVFAYFFIFGLSAIMLSFFISTFFKRAKTAVAVGTMSFLGAFLPYYTVNDEGVSMILKVLASLLSPTAFALGSINFADYERAHVGLRWSNIWRESSGVNFSACLLMMILDTLLYCAIGLYFDKVLPREYGLRYPWNFIFKKDFWRKKKVVNNCSSGFKVKTAGKSSESEGNLLGQDTSNPAIEAISLDMKQQEIDGRCIQIRNLHKVYATKKGDCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLLPPTSGDALVFGKNIVSDIDEIRKVLGVCPQHDILFPELTVKEHLELFAILKGAEEDTLETVIINMADEVGLADKINTVVRSLSGGMKRKLSLGIALIGNSKVIILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGSSLFLKHHYGVGYTLTLVKSAPTASIAGDIVYRYIPTATCISEVGTEISFRLPMASSSTFERMFREIEGCMKKTVLSMEISGSCEKDSYGIESYGISVTTLEEVFLRVAGCDYDEVECFEENNRSLISESVVSVPSNDLPSTKICYYKVFGNYKKIIGFMSTMVGRACDIIFAAVISFINFIGLQCCSCCLITTSTFWQHSKALFIKRAISARRDHKTIMFQLLIPAIFLFIGLLFMELKPHPDQIPLTLSTSYFNPLLSGGGGGGPIPFNLSFPIAEKVAQNVKGGWIQRCNPSSYKFPNSEKALADAVEAAGPTLGPSLLSMSEYLMSSFNESYQSRYGAIVMDDQNTDGSLGYTVLHNFSCQHAAPTFINLMNSAILRLASHNMNATIQTRNHPLPMTQSQHLQRHDLDAFSAAIIVNIAFSFIPASFAVSIVKEREVKAKHQQLISGVSVLSYWASTFIWDFVSFLFPASFAIVLFYIFGLDQFVGGVSLLPTIIMLLEYGLAIASSTYCLTFFFFDHTVAQNVVLLVHFFSGLILMVISFIMGLIPSTISANSFLKNFFRISPGFCFADGLASLALLRQGMKDKTSDGVYDWNVTGASICYLAIESVIYFLLTLGLEIFPSLKSTPFTMKKWWRKINIFPRNTTYLEPLLEPSPETIFTDLNEDVDVKTERSRVLSGSVDNAIIYLRNLRKVYSEEKKHGKKVAVDSLTFSVQEGECFGFLGTNGAGKTTTLSMLCGEESPSDGTAFIFGKDICSHPKAARKYIGYCPQFDALLEFLTVKEHLELYARIKSVPDYTIDNVVMEKLVEFDLLKHANKPSFSLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWDVISRISTRRGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNHLELEVKPTEVSSVDLQTLCQAIQEMLFDVPSQPRSLLNDLEICIGGADSGASGNISIAEISLTSEMIGLIGRWLGNEERVKTLMRCTPVCEGASQEQLSEQLFRDGGIPLPVFSEWWLSKQKFSEIDSFILSSFCGARCQGYNGLSIRYQLPCDEDFSLADVFGLLEANRDRLGIAEYSLSQSTLETIFNHFAANS 1892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03372 1892 CDD ABC_subfamily_A 1464 1690 - -
Trre13g03372 1892 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1459 1696 IPR027417 -
Trre13g03372 1892 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 557 798 IPR027417 -
Trre13g03372 1892 CDD ABC_subfamily_A 560 781 - -
Trre13g03372 1892 ProSitePatterns ABC transporters family signature. 1601 1615 IPR017871 GO:0005524|GO:0016887
Trre13g03372 1892 FunFam ATP-binding cassette sub-family A member 12 552 797 - -
Trre13g03372 1892 Pfam ABC-2 family transporter protein 231 481 IPR013525 GO:0016020|GO:0140359
Trre13g03372 1892 Pfam ABC-2 family transporter protein 992 1394 IPR013525 GO:0016020|GO:0140359
Trre13g03372 1892 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1464 1702 IPR003439 GO:0005524
Trre13g03372 1892 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 990 1400 IPR026082 GO:0016020|GO:0055085|GO:0140359
Trre13g03372 1892 ProSitePatterns ABC transporters family signature. 695 709 IPR017871 GO:0005524|GO:0016887
Trre13g03372 1892 FunFam ABC transporter A family member 1 1453 1707 - -
Trre13g03372 1892 Pfam ABC transporter 580 723 IPR003439 GO:0005524
Trre13g03372 1892 Gene3D - 1455 1706 IPR027417 -
Trre13g03372 1892 Gene3D - 547 796 IPR027417 -
Trre13g03372 1892 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 560 793 IPR003439 GO:0005524
Trre13g03372 1892 SMART AAA_5 1494 1680 IPR003593 GO:0016887
Trre13g03372 1892 SMART AAA_5 588 770 IPR003593 GO:0016887
Trre13g03372 1892 Pfam ABC transporter 1486 1628 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03372 Trre-Chr13 41205108 41241532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03372 560 796 Calmodulin-binding Proteins AT2G36910 25.911 2.92e-17 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03372 K05643 - gmx:100803263 3311.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03372 13 41205108 41241532 Trre13g03372 13 41205108 41241532 ECH