LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre13g03371	ATGGAAGGAGTGGTAATTAGTGAGAAGGGATTGTTGGAATGTGGAAGAAAGTGCACTCCATCACCCTTCTTGTTAAAGACATACATGTTGGTCGAGGATCCGGTCACGGATGATGTGATATCGTGGAACGAAGATGGATCGGCGTTCATCGTGTGGCAACCGGCGGAGTTTGCTCGTGATCTCCTTCCAACACTCTTCAAACATAGCAACTTCTCTAGCTTTGTACGCCAGCTCAATACCTATGGGTTTCGTAAAGTTGCAACAAATAGATGGGAGTTTTGCAATGAAAAGTTCAAGAAAGGTGAAAGAGAATTGCTATCCGAGATTCGGCGAAGAAGAGCTTGGAGCAACAACAAGCAACATCACACCGTGCAAAACCAAGATTCCGATGAAGACCAAAGGTCATCATCAACCTCATCATCGTCCGGTTATATTAATCTTGTCGATGAAAACAAGCGACTCAAGAAGGAGAATGCGGTGTTGAATTCTGAGCTAACAAGCATGAAATGGAAGTGTAAGGAGCTAGTTGATTTGGTTACAATTTATAACCAAAAAAAGGAAGAGGAAGAAGCTAAAGAGAATGATAAAAGGCCACTGTTGTTTGGAGTGAGATTAGATGTTCAACAAGGAGATAGAAAGATAAAGAGGAATAGAGCTGAGATTGGTGAAAACGCAAGTATTTTGTTGTCTCAATCATGCAAATAG	705	0.417	MEGVVISEKGLLECGRKCTPSPFLLKTYMLVEDPVTDDVISWNEDGSAFIVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATNRWEFCNEKFKKGERELLSEIRRRRAWSNNKQHHTVQNQDSDEDQRSSSTSSSSGYINLVDENKRLKKENAVLNSELTSMKWKCKELVDLVTIYNQKKEEEEAKENDKRPLLFGVRLDVQQGDRKIKRNRAEIGENASILLSQSCK	234

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre13g03371	234	MobiDBLite	consensus disorder prediction	117	144	-	-
	Trre13g03371	234	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	20	181	IPR027725	-
	Trre13g03371	234	SMART	hsfneu3	19	112	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre13g03371	234	MobiDBLite	consensus disorder prediction	130	144	-	-
	Trre13g03371	234	PRINTS	Heat shock factor (HSF) domain signature	74	86	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre13g03371	234	PRINTS	Heat shock factor (HSF) domain signature	23	46	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre13g03371	234	PRINTS	Heat shock factor (HSF) domain signature	61	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre13g03371	234	Coils	Coil	144	171	-	-
	Trre13g03371	234	Gene3D	-	15	113	IPR036388	-
	Trre13g03371	234	ProSitePatterns	HSF-type DNA-binding domain signature.	62	86	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre13g03371	234	SUPERFAMILY	"Winged helix" DNA-binding domain	20	112	IPR036390	-
	Trre13g03371	234	FunFam	Heat stress transcription factor B-4	15	113	-	-
	Trre13g03371	234	Pfam	HSF-type DNA-binding	23	112	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre13g03371	Trre-Chr13	41201817	41203711	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre13g03371	20	182	HSF	AT2G41690	62.222	1.10e-71	217

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Trre13g03371		HSF_DNA-bind	1.1e-31	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre13g03371	K09419		-	gmx:100802739	319.701