Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03351 ATGGATGTTGAATTGAAACCTGATGGAAGCTACGTTTGGGAGACGATTGTAAAAGAAACAACTGCAGCAAAATCAAAACCTCAAGTCATGCATTTCCCAAGTATAATTGCTAGCTCGGCTTTGGGAGATAAACAAACAAAAATCTCGGTGGGAACTACAACTGGACAAAGCTTCTCTTGCAACATTATCACCTACCCGAATAGAAGATCTTGTAAATACCTCTCAAAAGAATGGGGTCAATTTGTGAAAAGAAACAACCTTGAAGTTGGGGATAAGCTGATCTTCAATCTTGCAAAACCACCAACAAACCTCATGATTAAGATCATCCGTCACAAAGGTCACAACTGA 348 0.3937 MDVELKPDGSYVWETIVKETTAAKSKPQVMHFPSIIASSALGDKQTKISVGTTTGQSFSCNIITYPNRRSCKYLSKEWGQFVKRNNLEVGDKLIFNLAKPPTNLMIKIIRHKGHN 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03351 115 SUPERFAMILY DNA-binding pseudobarrel domain 28 108 IPR015300 -
Trre13g03351 115 Gene3D - 16 115 IPR015300 -
Trre13g03351 115 ProSiteProfiles B3 DNA-binding domain profile. 15 112 IPR003340 GO:0003677
Trre13g03351 115 CDD B3_DNA 55 110 IPR003340 GO:0003677
Trre13g03351 115 Pfam B3 DNA binding domain 21 111 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03351 Trre-Chr13 41094899 41095330 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre13g03351 B3 1.6e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03351 - K21877 tpra:123904760 80.1073