Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03349 ATGGTGATGATATGGGAAGATCTAACAGTAACAATTGGTGCAGACAACAAGAAGTTGCTTGATGGTGTCACTGGTTTTGCTCAACCTGGTAGGATCATGGCTGTTATGGGTCCTTCTGGCTGTGGCAAAACCACCCTACTCAACTCTTTGGCTGGAACACATGCTGCAGTTGTTGCAGTGAGTGGCAACATTCAAATCAACGGCAAAAGGAGAAATTTGTACTCCAAAGAAGTGTCTTATGTGGGTCAAGAGGAACTTTATTTGGGAACTTTGACTGTAAAAGAAACCCTCACATACTCAGCAAACATGAGGCTTCCTTCTAAAATGACAAAACAAGAGATAGACAAAGTTGTGGAAGAAACAATAATAGAAATGGGACTTGAAGATTGTGCTAATACTAAAATTGGTAATTGGCATCTAAGGGGTATTAGTAATGGTGAAAAGAAAAGACTTAGCATTGGTCTTGAGATTTTGACACAACCCTTTGTGTTACTTCTTGATGAACCAACTAGTGGACTTGATAGTGCCTCAGCATTCTATGTGATTCAAGCTTTAAGTAACATAGCTTTTAAAGGAAAGATAGTTATTTGTTCAATTCACCAGCCAGGGTGTGAAACTTTCAATATTTTTGATGATTTGCTTTTGCTCTCAAATGGTGAAACTGTTTATTTTGGAGAAGCAAATATGGCTCTAAAGTTTTTTGCTGATGCAGGTTTTCCTTGTCCTATAAAAAGAAATCCTTCAGATCATTTCCTTATGAGCATTAATTTGGATTTTGACTTCATTAATGAAGCTCTTGCAAGATGCCATCCAATATCGTCAAATTCATCTGTGGAAAAGAGAACGGCAAACATTAGAAAGAAACTCATAGAAAGTTACAAAAATTCAGAGCTAATCAATGCAAGAAGAAAAATTCAACAGCTAAAAACCAATGTGATGGAAGAGGAAGCAACTAATTCCAATATTGTAAGAAGCAGTGCCAATTGGTGGAAGCAACTTAGCACATTGACCAAACGGTCTTCCCTTAACATGAGGAGAGACTTGGGCTACTACTGGCTAAGGATAATATTCTACATACTTACAGGAATTACTATTGGCACCCTCTTTTTTCACATTGGCACAGGCAACTCCTCAATTTTGGCTAGAGGAAAGTGTGTATCATTCATTTATGGTTTCATGATTGCTTTGTCATGTGGAGGATTGCCATTTTTCATTGAAGAATTGAAGGTATTTTATGGTGAAAGATCCAAAGGGCATTGTGAAGAGGCTGCATTTGTAATATCAAACATTATATCATCATTTCCCTTCCTCCTTCTAGTATCACTGTCCTCTGGATTAATTATTTACTTCATGGTGCAATTTCATCCTGGTGTTACAAACTGCGTATTTTTTTGTATCAACTTATTTTGTTGTCTATCTGTTGTTGAGAGCTGCATCATGGTTGTAGCTGCAGTGGTCCCCAATGTCATGATGGGTATAGGAGCAGGAACTGGTTTTATAATTTTCATGATGATGCCTTCCCAAATATGCAGACCGCTAAGTGACATTCCTAAGTTCTTTTGGCGCTATCCAATGTCCTATCTCAGTTTTGCTACTTGGGCAGTGCAGGGACAATACAAGAATGACATGTTGGGGGTTGAGTTTGATCCTTTACTACCTGGAGGCCCAAAAGTTACTGGAGAACAAGTATTGCCAATATTATTTGGTGTTCCACTAAGTCATGGAAAATGGTTGGACCTAACAGTTTTGGTTATCTTATTATTTCTCCATAGATTGCTTCTATTCTTGGTGCTTCGGTATAACAAAAAAGGAATATCACATTTGCTATGGTTTTATGCAAAGGGAAATGTAAAATTTGCAAAACGAGGTTTCTTGAGGAGAAAGCCATCAATGTCTTCTAAGAAACAAGAACCAACACTTCCACTATCCTCTCTAGAGAATGCCATGTCCCCATACTATGCAATATTAAAGCTTTGA 1977 0.3784 MVMIWEDLTVTIGADNKKLLDGVTGFAQPGRIMAVMGPSGCGKTTLLNSLAGTHAAVVAVSGNIQINGKRRNLYSKEVSYVGQEELYLGTLTVKETLTYSANMRLPSKMTKQEIDKVVEETIIEMGLEDCANTKIGNWHLRGISNGEKKRLSIGLEILTQPFVLLLDEPTSGLDSASAFYVIQALSNIAFKGKIVICSIHQPGCETFNIFDDLLLLSNGETVYFGEANMALKFFADAGFPCPIKRNPSDHFLMSINLDFDFINEALARCHPISSNSSVEKRTANIRKKLIESYKNSELINARRKIQQLKTNVMEEEATNSNIVRSSANWWKQLSTLTKRSSLNMRRDLGYYWLRIIFYILTGITIGTLFFHIGTGNSSILARGKCVSFIYGFMIALSCGGLPFFIEELKVFYGERSKGHCEEAAFVISNIISSFPFLLLVSLSSGLIIYFMVQFHPGVTNCVFFCINLFCCLSVVESCIMVVAAVVPNVMMGIGAGTGFIIFMMMPSQICRPLSDIPKFFWRYPMSYLSFATWAVQGQYKNDMLGVEFDPLLPGGPKVTGEQVLPILFGVPLSHGKWLDLTVLVILLFLHRLLLFLVLRYNKKGISHLLWFYAKGNVKFAKRGFLRRKPSMSSKKQEPTLPLSSLENAMSPYYAILKL 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03349 658 SMART AAA_5 29 220 IPR003593 GO:0016887
Trre13g03349 658 Coils Coil 298 318 - -
Trre13g03349 658 Pfam ABC-2 type transporter 200 252 IPR043926 GO:0140359
Trre13g03349 658 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 2 613 - -
Trre13g03349 658 Gene3D - 2 234 IPR027417 -
Trre13g03349 658 Pfam ABC transporter 21 171 IPR003439 GO:0005524
Trre13g03349 658 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 232 IPR027417 -
Trre13g03349 658 Pfam ABC-2 type transporter 332 537 IPR013525 GO:0016020|GO:0140359
Trre13g03349 658 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 3 243 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03349 Trre-Chr13 41068403 41080853 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03349 30 225 Calmodulin-binding Proteins AT2G36910 25.871 1.57e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03349 - K05681 gmx:100802207 917.146