Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03348 ATGGTGATGATATGGGAAGATCTAACAGTAACAATTGGTGCAGACAACAAGAAGTTGCTTGATGGTGTCACTGGTTTTGCTCAACCTGGTAGGATCATGGCTGTTATGGGTCCTTCTGGTTGTGGCAAAACCACACTACTCACCTCTTTGGCTGGAACACATGCTGCAAATGTTGCGGTGACTGGCAACATTCAAATCAACGGGAAAAGGAGAAATTTGTACTCTAAACAAGTGTCTTATGTAGGTCAAGAGGAACTTTTCTTAGGAACCTTGACTGTAAAAGAAACCCTTACATATTCAGCAAACATGAGGCTACCTTCTAAAATGACAAAACAAGAGATAGACAAAGTTGTGGAAGAAACAATAATAGAAATGGGACTTGAAGATTGTGCTAATACTAAAATTGGTAATTGGCATTTAAGAGGTATTAGTAATGGTGAAAAGAAGAGACTTAGCATTGGTCTTGAGATTTTGACACAACCCTTTGTGTTACTTCTTGATGAACCAACTAGTGGACTTGATAGTGCCTCAGCATTCTATGTGATTCAAGCTCTAAGCAACATAGCTTTTAAAGGAAAGATAGTTATTTGTTCAATCCATCAGCCAGGGTGTGAAACTTTTAATATTTTTGATGATTTGCTTTTGCTCTCAAATGGTGAAACTGTTTATTTTGGAGAAGCAAAATTGGCTCTAAAGTTTTTTGCTGATGCAGGTTTTCCTTGTCCTACCAAAAGAAATCCTTCAGATCATTTCATCATGAGCATTAATTTGGATTTTGACTTGATTAAAGAAGCTCTTGCAAGATACCATCCTACATCATCAAATTCAACCGTAGGAATGAGAACATCGGATATTAGAAGGCAACTCATAGAGAGCTACAAAAATTCAGAGTTAATCATCAATGCAAGAAGAAAAATTCAACAACTAAAAACCAATGTGATGGAAGAGGAAGCAACTAATTCCAATATTGCAAGAAGCAGTGCCAACTGGTGGAAGCAACTAACCACAATGACCAAACGGTCTTTCCTTAACATGAATAGAGATTTGGGCTACTACTGGCTAAGGATAATATTCTACATACTGACAGGAATTACTGTTGGCACCCTCTTTTTTCACATTGGCACCGGCAACTCCTCAATTTTGGCTAGAGGAAAGTGTGTATCATTCATTTATGGTTTCATGATATGTTTGTCATGTGGAGGATTACCATTTTTCATTGAAGAATTGAAGGTGTTCTATGGTGAAAGATCCAAAGGACATTGTGGAGAGGCTGCATTTGTGATATCAAACATTATATCATCATTCCCTTTCCTTCTTCTAATATCACTATCCTCTGGAATAATAATTTACTTCATGGTGCAATTTCATCCTGGTTTTATAAATTGTACATTTTTTTGTATCAACTTATTCTGCTGTCTATCGGTTGTTGAGAGCTGCATCATGGTTGTGGCCGCAATTGTCCCGAATGTCATGACGGGCATAGGAATAGGGACCGGTTTTATAATTTTTATGATGATGCCCTCCCAAATATTCAGACCATTAAATGATATTCCAAAGTTCTTTTGGCGCTATCCAATGTCCTACCTCAGTTTTGCTACATGGGCAATGCAGGGACAATACAAAAATGACATGTTGGGGATTGAGTTTGATCCTCTACTACCTGGGGACCCAAAAGTTACCGGGGAACAAGTACTGCCAATATTATTTGGTGTTCCACTAAGTCATGGAAAATGGTTGGACCTAATAGTTTTGGCTATCTTATTATTTGTTCATAGATTGCTTCTTTTCTTGGTGCTTAGATATAACAAAAGAGGAATATCACATTCCCTATGGTTTTATGCTAAAAACAATCTAAAATTTGCAAAACAGCATTTAAGGAAGAACAAGCCAACAATATCTTCTAAGAAACAAGAACTGCCACATCCATTATCGTCTCTAGAAAATGCTATGTCTCCACCACAATATTAA 1968 0.3725 MVMIWEDLTVTIGADNKKLLDGVTGFAQPGRIMAVMGPSGCGKTTLLTSLAGTHAANVAVTGNIQINGKRRNLYSKQVSYVGQEELFLGTLTVKETLTYSANMRLPSKMTKQEIDKVVEETIIEMGLEDCANTKIGNWHLRGISNGEKKRLSIGLEILTQPFVLLLDEPTSGLDSASAFYVIQALSNIAFKGKIVICSIHQPGCETFNIFDDLLLLSNGETVYFGEAKLALKFFADAGFPCPTKRNPSDHFIMSINLDFDLIKEALARYHPTSSNSTVGMRTSDIRRQLIESYKNSELIINARRKIQQLKTNVMEEEATNSNIARSSANWWKQLTTMTKRSFLNMNRDLGYYWLRIIFYILTGITVGTLFFHIGTGNSSILARGKCVSFIYGFMICLSCGGLPFFIEELKVFYGERSKGHCGEAAFVISNIISSFPFLLLISLSSGIIIYFMVQFHPGFINCTFFCINLFCCLSVVESCIMVVAAIVPNVMTGIGIGTGFIIFMMMPSQIFRPLNDIPKFFWRYPMSYLSFATWAMQGQYKNDMLGIEFDPLLPGDPKVTGEQVLPILFGVPLSHGKWLDLIVLAILLFVHRLLLFLVLRYNKRGISHSLWFYAKNNLKFAKQHLRKNKPTISSKKQELPHPLSSLENAMSPPQY 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03348 655 Pfam ABC-2 type transporter 333 538 IPR013525 GO:0016020|GO:0140359
Trre13g03348 655 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 3 243 IPR003439 GO:0005524
Trre13g03348 655 MobiDBLite consensus disorder prediction 631 655 - -
Trre13g03348 655 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 231 IPR027417 -
Trre13g03348 655 Pfam ABC transporter 21 171 IPR003439 GO:0005524
Trre13g03348 655 Pfam ABC-2 type transporter 200 252 IPR043926 GO:0140359
Trre13g03348 655 Coils Coil 299 319 - -
Trre13g03348 655 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 2 615 - -
Trre13g03348 655 SMART AAA_5 29 220 IPR003593 GO:0016887
Trre13g03348 655 Gene3D - 2 234 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03348 Trre-Chr13 41033575 41039582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03348 30 225 Calmodulin-binding Proteins AT2G36910 26.368 4.42e-10 61.2