Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03345 ATGGAGAATTATTCAAGAAGTGGTGTTCATGATTTCACTATGGCTTCAAGAAAAGCTGAAGAAGCAAATTGGAGACGTTATGAGGCAACACAATGGCTTGAAAGTCAAGTGGGTCCTATTGGAATATCAAAACAACCAACAGAAAGAGAACTTGTTTCTTGCTTGAGAAATGGTCTCATTCTTTGTAAGGCTATTAACAAGATTCATCCAGGAGCAGTGCCAAAGGTTGTGGATACTCAAGTGCCATTGCAATCACTTACATGGGATTCTCAGCCTTTACCTGCTTATCAGTATTTTGAAAATGTCAGAAACTTTCTGGTTGCTGCTGCAGAATTAAAGCTTCCAGCTTTCGAAGCTTCTGATCTCGAAAGGGAAAGTGTAGAAAATGGATCAGCAGGAAAAATTGTTGATTGTATTCTGTCACTTAAATGGTTTCATGAGTCGAAGCAGATGAACAATCAGAGTGGAAGCAAACACATGAAATCTCCTTTAGTTATGCAATCAATCAGTAGATTGCAACAAAGGGCCACAACTGCATTACCCACTGATGCATGCAGGCGCTTGGATTTGTCTGCAACATCCGAAAAAAAGCCTCCTGCTGAGAATAATTTTCAAAAACCAGAAGAAATTATGGAATCACTTGTCAAGATACTAGTTGACCGTATGCTTGATGCCAAAGAAAATGTCGATGGAAAACTTGTTGCTTCTCTTTCTAATGGAGACACGGATCCAATAATCCTATTTAATCAGATTTTGACTAGTTATTGTGGGGAACAGCCATCTTTGAATTTACCTGAGTTGCCATTGCTACTAAAGAATTTTATAAAAGAAGGGAGTAGCTTACCTCCTCACCTCACTTCCAAACCCACGGAATCAGATGCTTTATCTGCACGTGCAAGTTCCAAGTGTTACAGAGCCTGCCCTGGAAAGTGCACATGCAATCACAAGCATCTCATAGACATACAGAAAAAAGAACTTCGGGATCTCAAGGCTTTGAAGTTGAAAATTAAGAATGAGTTTGAAGAGATGCAATCTCAGTTTCAGAAATTTTTCAATGATATAGGTAGTCAAGTAAATGAGATGTCAACCAAAGCTCTTGGATATCATAAAGTAGTAGAAGAGAACAGAAAACTGTACAACATGGTCCAAGATTTGAAAGGTAATATTCGAGTTTACTGCAGAATCAGGCCCGCGTTCAGGGCTGAATCCAAGAATGTGGTCGATTTCATCGGGGAAGACGGTTCTCTATTCATTTTAGACCCATCAAAAACGCTAAAAGATGGAAGAAAACTTTTTCAGTTTAATCGGATTTTTGGTCCAACAGCTGGCCAAGACGAGGTTTATCGAGACACCCAACCTTTAATTAGATCTGTGATGGATGGATACAACGTTTGTATTTTTGCTTATGGTCAAACGGGGTCTGGGAAGACTCACACCATGAGTGGTCCTTCCGGCGGAACATCCAAGGATATGGGGATCAATTATCTGGCTCTCAATGATTTGTTTCAAATGTCTAATGAAAGGAAGGACAATATAACATTGCGGTCAGTAAAGTCTACCACTGATGTTCTAACCCTCATGAAGCTTGGCGAGGTTAACCGCGCCGTCAGTTCTACAGCAATAAACAATAGGAGTAGTCGTTCGCACAGTGTACTTACTGTGCATATCAATGGAAAAGATACATCTGGCAACTCCATTCGAAGCTGCCTTCATTTAGTAGACCTTGCCGGAAGCGAAAGAGTTGACAAGTCGGAAGTCACAGGAGATAGACTTAAGGAAGCGCTATATATTAACAAGTCTCTTTCTTGTTTGGGAGATGTGATCACAGCACTGGCACAGAAGAATTCTCACATTCCTTACAGGAACAGCAAACTTACACTTCTTTTGCAGGACTCATTAGGTGGACATGCTAAAACGTTGATGTTTGCACATGTGAGTCCTGAAGCAGATTCCTTTGGCGAAACAGTGAGTACTCTAAAATTTGCTCAGAGGGTTTCCACTGTGGAACTTGGCGCAGCCCGGATGAACAAAGAAAGCAGTGAAGTTATGCAACTTAAAGCACAGGTTGAGAACCTTAAGATTGCTTTGGCAAACAAAGAAAATTCAAGACCAATGTTAAATAGAACTAAAGAGCCTCTCACTCCGTTAGAAAAAACTCCACTGCGCCTGCGAAGACTTAGTATTGAGAATTGCAGCACGGTAAAGACCGACAAACCTGTGAAAGCTGAGGATAAAAGTGGAGCCAAATCACCTTCTTACATTCCTCGTTCAAGAAGGCTAAGCTTGGAAGGTCCAAGAACTATCAAAAAAGCATCAGCTGATGTAAACAAAACCTTACAGTTTGAGCCAATGTCTCAACAGAAATATCGTCCACAGCAAGATCCAGAAGCAATGTCAAAGCTAAATGGTCAACTGAGCAATGGCAATTCCAGGTCAGATTTGCATGTTAAACCTCCTTCGAGTCCTACAAACATGTATCAGAAGAGGTTGATAAAAGTTGATAGTGGAGTCCAAATTCACCCTCTTAAACTACCTCAAACACCTGAACCACAATTGCTAGATAAAAATGATTCAAACAGAATTGTGGCAAGTGATCTTAATGATTCCATAACAACAAAGGTGATAGTGAGCACAAATGGAAAAGGTTCCCAACTAAGAAGATCCCTTAGAACAATCGGGAAACTGATTAATGGCCCTGATAAGAAGAGCCAACAGATTAATGTTGAAGTGAAGTCACCTATCAAGAGCACCAGTCATGCAAATCAGATAAAGTCGCCTATAGCAACTACTGAAAGGACAACAAGGAGACGATCTTTAACAGGAATTCAACCATCCGGACCTAACAATTCACGAAGATCTTCTCTTGGAGGAGTGAAACCAGTCCCAGTAGCATATGAGAAGGAGAGAAATGCTAGAACACCTCCTCCTGTTCATTCAGAAAGCAAGAGTTCAAAACGGTGGCTATAG 2967 0.4071 MENYSRSGVHDFTMASRKAEEANWRRYEATQWLESQVGPIGISKQPTERELVSCLRNGLILCKAINKIHPGAVPKVVDTQVPLQSLTWDSQPLPAYQYFENVRNFLVAAAELKLPAFEASDLERESVENGSAGKIVDCILSLKWFHESKQMNNQSGSKHMKSPLVMQSISRLQQRATTALPTDACRRLDLSATSEKKPPAENNFQKPEEIMESLVKILVDRMLDAKENVDGKLVASLSNGDTDPIILFNQILTSYCGEQPSLNLPELPLLLKNFIKEGSSLPPHLTSKPTESDALSARASSKCYRACPGKCTCNHKHLIDIQKKELRDLKALKLKIKNEFEEMQSQFQKFFNDIGSQVNEMSTKALGYHKVVEENRKLYNMVQDLKGNIRVYCRIRPAFRAESKNVVDFIGEDGSLFILDPSKTLKDGRKLFQFNRIFGPTAGQDEVYRDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMSGPSGGTSKDMGINYLALNDLFQMSNERKDNITLRSVKSTTDVLTLMKLGEVNRAVSSTAINNRSSRSHSVLTVHINGKDTSGNSIRSCLHLVDLAGSERVDKSEVTGDRLKEALYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGHAKTLMFAHVSPEADSFGETVSTLKFAQRVSTVELGAARMNKESSEVMQLKAQVENLKIALANKENSRPMLNRTKEPLTPLEKTPLRLRRLSIENCSTVKTDKPVKAEDKSGAKSPSYIPRSRRLSLEGPRTIKKASADVNKTLQFEPMSQQKYRPQQDPEAMSKLNGQLSNGNSRSDLHVKPPSSPTNMYQKRLIKVDSGVQIHPLKLPQTPEPQLLDKNDSNRIVASDLNDSITTKVIVSTNGKGSQLRRSLRTIGKLINGPDKKSQQINVEVKSPIKSTSHANQIKSPIATTERTTRRRSLTGIQPSGPNNSRRSSLGGVKPVPVAYEKERNARTPPPVHSESKSSKRWL 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03345 988 MobiDBLite consensus disorder prediction 913 988 - -
Trre13g03345 988 Pfam Calponin homology (CH) domain 25 146 IPR001715 GO:0005515
Trre13g03345 988 CDD CH_AtKIN14-like 25 143 - -
Trre13g03345 988 SMART ch_5 25 142 IPR001715 GO:0005515
Trre13g03345 988 Gene3D Kinesin motor domain 330 512 IPR036961 -
Trre13g03345 988 Coils Coil 675 702 - -
Trre13g03345 988 ProSiteProfiles Kinesin motor domain profile. 388 668 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g03345 988 SMART kinesin_4 386 676 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g03345 988 Gene3D - 10 176 IPR036872 -
Trre13g03345 988 Pfam Microtubule binding 374 510 IPR031852 GO:0008017
Trre13g03345 988 Pfam Kinesin motor domain 511 667 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g03345 988 MobiDBLite consensus disorder prediction 778 823 - -
Trre13g03345 988 FunFam Kinesin-like protein KIN-14L 11 173 - -
Trre13g03345 988 Coils Coil 319 346 - -
Trre13g03345 988 SUPERFAMILY Calponin-homology domain, CH-domain 25 156 IPR036872 -
Trre13g03345 988 MobiDBLite consensus disorder prediction 737 823 - -
Trre13g03345 988 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 347 667 IPR027417 -
Trre13g03345 988 PANTHER KINESIN-LIKE PROTEIN KLP-3 30 513 IPR027640 GO:0003777|GO:0007018
Trre13g03345 988 Gene3D Kinesin motor domain 513 709 IPR036961 -
Trre13g03345 988 PRINTS Kinesin heavy chain signature 461 482 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g03345 988 PRINTS Kinesin heavy chain signature 569 587 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g03345 988 PRINTS Kinesin heavy chain signature 539 556 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g03345 988 PRINTS Kinesin heavy chain signature 618 639 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g03345 988 ProSiteProfiles Calponin homology (CH) domain profile. 23 147 IPR001715 GO:0005515
Trre13g03345 988 MobiDBLite consensus disorder prediction 913 955 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03345 Trre-Chr13 41006072 41012619 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03345 324 668 Calmodulin-binding Proteins AT5G65930 39.186 4.63e-61 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03345 K10406 - gmx:100786642 1398.26