Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03344 ATGATCATCATGGAGAATTATTCAAGAAGTGGTGTTCATGATTTCACTATGGCTTCAAGAAAAGCTGAAGAAGCAAATTGGAGACGTTATGAGGCAACACAATGGCTTGAAAGTCAAGTGGGTCCTATTGGAATATCAAAACAACCAACAGAAAGAGAACTTGTTTCTTGCTTGAGAAATGGTCTCATTCTTTGTAAGGCTATTAACAAGATTCATCCAGGAGCAGTGCCAAAGGTTGTGGATACTCAAGTGCCATTGCAATCACTTACATGGGATTCTCAGCCTTTACCTGCTTATCAGTATTTTGAAAATGTCAGAAACTTTCTGGTTGCTGCTGCAGAATTAAAGCTTCCAGCTTTCGAAGCTTCTGATCTCGAAAGGGAAAGTGTAGAAAATGGATCAGCAGGAAAAATTGTTGATTGTATTCTGTCACTTAAATGGTTTCATGAGTCGAAGCAGATGAACAATCAGAGTGGAAGCAAACACATGAAATCTCCTTTAGTTATGCAATCAATCAGTAGATTGCAACAAAGGGCCACAACTGCATTACCCACTGATGCATGCAGGCGCTTGGATTTGTCTGCAACATCCGAAAAAAAGCCTCCTGCTGAGAATAATTTTCAAAAACCAGAAGCAGAAATTATGGAATCACTTGTCAAGATACTAGTTGACCGTATGCTTGATGCCAAAGAAAATGTCGATGGAAAACTTGTTGCTTCTCTTTCTAATGGAGACACGGATCCAATAATCCTATTTAATCAGATTTTGACTAGTTATTGTGGGGAACAGCCATCTTTGAATTTACCTGAGTTGCCATTGCTACTAAAGAATTTTATAAAAGAAGGGAGTAGCTTACCTCCTCACCTCACTTCCAAACCCACGGAATCAGATGCTTTATCTGCACGTGCAAGTTCCAAGTGTTACAGAGCCTGCCCTGGAAAGTGCACATGCAATCACAAGCATCTCATAGACATACAGAAAAAAGAACTTCGGGATCTCAAGGCTTTGAAGTTGAAAATTAAGAATGAGTTTGAAGAGATGCAATCTCAGTTTCAGAAATTTTTCAATGATATAGGTAGTCAAGTAAATGAGATGTCAACCAAAGCTCTTGGATATCATAAAGTAGTAGAAGAGAACAGAAAACTGTACAACATGGTCCAAGATTTGAAAGGTAATATTCGAGTTTACTGCAGAATCAGGCCCGCGTTCAGGGCTGAATCCAAGAATGTGGTCGATTTCATCGGGGAAGACGGTTCTCTATTCATTTTAGACCCATCAAAAACGCTAAAAGATGGAAGAAAACTTTTTCAGTTTAATCGGATTTTTGGTCCAACAGCTGGCCAAGACGAGGTTTATCGAGACACCCAACCTTTAATTAGATCTGTGATGGATGGATACAACGTTTGTATTTTTGCTTATGGTCAAACGGGGTCTGGGAAGACTCACACCATGAGTGGTCCTTCCGGCGGAACATCCAAGGATATGGGGATCAATTATCTGGCTCTCAATGATTTGTTTCAAATGTCTAATGAAAGGAAGGACAATATAACGTATGACATTTATGTCCAAATGGTTGAGATTTATAATGAACAATTTATCTCCTTAACTAACCTCACATTAGAGATCCGAAGCTGTAACGATGATGGGTTGAGCCTTCCTGATGCTAGATTGCGGTCAGTAAAGTCTACCACTGATGTTCTAACCCTCATGAAGCTTGGCGAGGTTAACCGCGCCGTCAGTTCTACAGCAATAAACAATAGGAGTAGTCGTTCGCACAGTGTACTTACTGTGCATATCAATGGAAAAGATACATCTGGCAACTCCATTCGAAGCTGCCTTCATTTAGTAGACCTTGCCGGAAGCGAAAGAGTTGACAAGTCGGAAGTCACAGGAGATAGACTTAAGGAAGCGCTATATATTAACAAGTCTCTTTCTTGTTTGGGAGATGTGATCACAGCACTGGCACAGAAGAATTCTCACATTCCTTACAGGAACAGCAAACTTACACTTCTTTTGCAGGACTCATTAGGTGGACATGCTAAAACGTTGATGTTTGCACATGTGAGTCCTGAAGCAGATTCCTTTGGCGAAACAGTGAGTACTCTAAAATTTGCTCAGAGGGTTTCCACTGTGGAACTTGGCGCAGCCCGGATGAACAAAGAAAGCAGTGAAGTTATGCAACTTAAAGCACAGGTTGAGAACCTTAAGATTGCTTTGGCAAACAAAGAAAATTCAAGACCAATGTTAAATAGAACTAAAGAGCCTCTCACTCCGTTAGAAAAAACTCCACTGCGCCTGCGAAGACTTAGTATTGAGAATTGCAGCACGGTAAAGACCGACAAACCTGTGAAAGCTGAGGATAAAAGTGGAGCCAAATCACCTTCTTACATTCCTCGTTCAAGAAGGCTAAGCTTGGAAGGTCCAAGAACTATCAAAAAAGCATCAGCTGATGTAAACAAAACCTTACAGTTTGAGCCAATGTCTCAACAGAAATATCGTCCACAGCAAGATCCAGAAGCAATGTCAAAGCTAAATGGTCAACTGAGCAATGGCAATTCCAGGTCAGATTTGCATGTTAAACCTCCTTCGAGTCCTACAAACATGTATCAGAAGAGGTTGATAAAAGTTGATAGTGGAGTCCAAATTCACCCTCTTAAACTACCTCAAACACCTGAACCACAATTGCTAGATAAAAATGATTCAAACAGAATTGTGGCAAGTGATCTTAATGATTCCATAACAACAAAGGTGATAGTGAGCACAAATGGAAAAGGTTCCCAACTAAGAAGATCCCTTAGAACAATCGGGAAACTGATTAATGGCCCTGATAAGAAGAGCCAACAGATTAATGTTGAAGTGAAGTCACCTATCAAGAGCACCAGTCATGCAAATCAGATAAAGTCGCCTATAGCAACTACTGAAAGGACAACAAGGAGACGATCTTTAACAGGAATTCAACCATCCGGACCTAACAATTCACGAAGATCTTCTCTTGGAGGAGTGAAACCAGTCCCAGTAGCATATGAGAAGGAGAGAAATGCTAGAACACCTCCTCCTGTTCATTCAGAAAGCAAGAGTTCAAAACGGTGGCTATAG 3096 0.406 MIIMENYSRSGVHDFTMASRKAEEANWRRYEATQWLESQVGPIGISKQPTERELVSCLRNGLILCKAINKIHPGAVPKVVDTQVPLQSLTWDSQPLPAYQYFENVRNFLVAAAELKLPAFEASDLERESVENGSAGKIVDCILSLKWFHESKQMNNQSGSKHMKSPLVMQSISRLQQRATTALPTDACRRLDLSATSEKKPPAENNFQKPEAEIMESLVKILVDRMLDAKENVDGKLVASLSNGDTDPIILFNQILTSYCGEQPSLNLPELPLLLKNFIKEGSSLPPHLTSKPTESDALSARASSKCYRACPGKCTCNHKHLIDIQKKELRDLKALKLKIKNEFEEMQSQFQKFFNDIGSQVNEMSTKALGYHKVVEENRKLYNMVQDLKGNIRVYCRIRPAFRAESKNVVDFIGEDGSLFILDPSKTLKDGRKLFQFNRIFGPTAGQDEVYRDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMSGPSGGTSKDMGINYLALNDLFQMSNERKDNITYDIYVQMVEIYNEQFISLTNLTLEIRSCNDDGLSLPDARLRSVKSTTDVLTLMKLGEVNRAVSSTAINNRSSRSHSVLTVHINGKDTSGNSIRSCLHLVDLAGSERVDKSEVTGDRLKEALYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGHAKTLMFAHVSPEADSFGETVSTLKFAQRVSTVELGAARMNKESSEVMQLKAQVENLKIALANKENSRPMLNRTKEPLTPLEKTPLRLRRLSIENCSTVKTDKPVKAEDKSGAKSPSYIPRSRRLSLEGPRTIKKASADVNKTLQFEPMSQQKYRPQQDPEAMSKLNGQLSNGNSRSDLHVKPPSSPTNMYQKRLIKVDSGVQIHPLKLPQTPEPQLLDKNDSNRIVASDLNDSITTKVIVSTNGKGSQLRRSLRTIGKLINGPDKKSQQINVEVKSPIKSTSHANQIKSPIATTERTTRRRSLTGIQPSGPNNSRRSSLGGVKPVPVAYEKERNARTPPPVHSESKSSKRWL 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03344 1031 SMART kinesin_4 390 719 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g03344 1031 MobiDBLite consensus disorder prediction 956 998 - -
Trre13g03344 1031 FunFam Kinesin-like protein KIN-14A 334 713 - -
Trre13g03344 1031 PANTHER KINESIN-LIKE PROTEIN KLP-3 33 952 IPR027640 GO:0003777|GO:0007018
Trre13g03344 1031 PRINTS Kinesin heavy chain signature 465 486 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g03344 1031 PRINTS Kinesin heavy chain signature 612 630 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g03344 1031 PRINTS Kinesin heavy chain signature 661 682 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g03344 1031 PRINTS Kinesin heavy chain signature 582 599 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g03344 1031 MobiDBLite consensus disorder prediction 821 866 - -
Trre13g03344 1031 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 392 745 IPR027417 -
Trre13g03344 1031 Gene3D - 13 179 IPR036872 -
Trre13g03344 1031 CDD CH_AtKIN14-like 28 146 - -
Trre13g03344 1031 MobiDBLite consensus disorder prediction 956 1031 - -
Trre13g03344 1031 MobiDBLite consensus disorder prediction 775 866 - -
Trre13g03344 1031 Pfam Calponin homology (CH) domain 28 149 IPR001715 GO:0005515
Trre13g03344 1031 ProSiteProfiles Calponin homology (CH) domain profile. 26 150 IPR001715 GO:0005515
Trre13g03344 1031 SUPERFAMILY Calponin-homology domain, CH-domain 28 159 IPR036872 -
Trre13g03344 1031 ProSiteProfiles Kinesin motor domain profile. 392 711 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g03344 1031 Pfam Kinesin motor domain 398 710 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g03344 1031 Coils Coil 718 745 - -
Trre13g03344 1031 FunFam Kinesin-like protein KIN-14L 14 176 - -
Trre13g03344 1031 Coils Coil 323 350 - -
Trre13g03344 1031 SMART ch_5 28 145 IPR001715 GO:0005515
Trre13g03344 1031 Gene3D Kinesin motor domain 334 713 IPR036961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03344 Trre-Chr13 41006072 41012628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03344 328 711 Calmodulin-binding Proteins AT5G65930 39.798 4.51e-68 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03344 K10406 - gmx:100786642 1472.22