Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03316 ATGGATCACAGGACCTACTCCACTCTCTTCAATCTCCAGTCTTTGGTGAACTTTGAACTTCCAGAACAAGATGATGATTTTGAATATTATGGGAATAGTAGTCAGGATGAGAGCAGAAACACCAGAGGTGGTGCAATTGGTAATAATGGGAATGGGAATGTGTCGGGAAGGGATTTGAATTTGTTGAAGAAGAGGAGGTTGTCTCGAAACAGTGAAAACGAGGAAAGGAGTGGTTTTGAAGGGACACGTATGATGGAGGAACGATACCGATCAATGCTTGGAGACCATATTAAGAAATACAAGAGGAGGTTTAAAGGTGCCTCGAGTAATCCTGGCTCAAATCAGGTTGTTGTTCCCTTTGTTAAAAGTAACAATGGATTAAAAGCTCCCAAGCTAGGGAATGAGCGCAGGAGAGGATTGCGTGATGAGGAGACTATATCTGAATGGATAAATAATTCCAATGCTCAGAAACCAGGGAACTTTCTTGATACAGATTTCATACAACAACATCGCACTGATAGGGTTATGTATGAACCTGCATCAGTGTATATTGGGGATGGTATAGCTTATAAGATTCCTCCAATTTATGATAAGTTGGCAGCAACAATGAACCTTCCAAGCCTCTCAGATATTCACATTGAGGATTTTTACCTAAAAGGTACATTGGATTTGGGATCCTTGGCTGAAATGATGGCATCTGATAAAAGGCCTGGGAATAGAAACCGAGCAGGCATGGGGGAAACTCTATCCCAGTATGAATCACTTCAAGCACGTCTAAAAGACACACCAGCTTCTAATTCAACTCACAAATTCAGTTTGAAAATATCTGATGCTGATTTGAATTCCTCCATTCCGGAGGGGGCAGCTGGAAGCATAAAGCGATATATTTTATCAGAGGGTGGTATATTGCAGGTTTATTATGTGAAGGTTTTGGAGAAAGGAGACACTTATGAGATCATTGAAAGAAGCTTACCCAAGAAACAAAAGATAACGAAAGACCCTGCGTTAATAGAGAAAGAGGAAATGGAAAAATTGGGAAGGATTTGGGTAAATATTGTGAGAAGAGACATACCAAGACATCATAGGAATTTTACTACTTTTCATCGAAAGCAGCTCGTTGATGCCAAGAGGGCCTCAGAAAACTGTCAAAGAGAGGTTAAAATGAAAGTTAGTAGATCGCTTAAATGGACGAGAACTGCTAGCATACGCACCCGAAAACTAGCTAGAGACATGTTACTATTCTGGAAACGAATAGATAAGGAGATGTTAGAAGTAAGGAAAAAGGAGGAAAAAGAAGCTGCTGAAGCTTTGAGGCGTGAGCAGGAGCTTCGAGAAGCAAAGAGGCAGCAGCAAAGGCTAAATTTTCTTATACAACAGACTGAGCTGTACAGTCACTTTATGCAGAACAAGTCAATATCTTCAGAAGCTCTAACCATGGTGGATGAAAGTACAAATGATGAAAATGCACTGATCAACTCTCTAGCAGATGGTCCTAGCGGGGAGGAAGATCCCGAAGAAGTTGAACTGAAGAAGGAAGCTTTGAAGGCTGCTCAAGAAGCAGTTTCTAAGCAGAAAATGTTAACAAGTGCTTTTGATACTGAATGCTTGAGGTTGCGCCAGGCTGGTGAATCTGATTCACTTCAACCAGAAGTTTCTGGAGCAAGTAATATTGACTTGAAGACCCCCTCCACCATGCCCGTGGCATCTACAGTTCGAACACCTGAATTATTTAATGGGATTCTCAAAGATTATCAGCTAAAAGGTCTTCAATGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGTATTCTTGCCGACGAGATGGGACTTGGAAAGACCATTCAGGCTATGGTTTTTTTAGCTCATTTAGCCGAGGAGAAAAACATATGGGGACCTTTTTTGATTGTTGCACCTGCTTCTGTATTAAATAATTGGAATGAGGAACTCGAGCGCTTCTGCCCTGAACTGAAAATACTTCCTTATTGGGGTGGGCTTTCAGAGCGGACAGTGCTTAGGAAAAGTATGAATCCAAAGGATCTCTATCGCAGGGAAGCTAAATTTCACATTCTCATCACAAGCTACCAGCTGTTAGTCGCTGATGAGAAGTATTTCCGGCGCGTGAAATGGCAGTATATGGTTTTAGATGAAGCTCAAGCAATTAAAAGTGCCAATAGTATAAGATGGAAGACACTCCTCAGCTTTAACTGTCGGAATCGCCTACTGCTGACTGGTACACCCGTTCAGAATAATATGGCTGAGTTATGGGCTCTTCTTCATTTCATTATGCCAACTTTATTTGACAGCCATGAGCAGTTTAATGAGTGGTTTTCAAAAGGAATAGAGAACCATGCAGAACATGGGGGTACTTTGAATGAGCACCAACTTAATCGATTGCATTCAATTATAAAGCCTTTCATGCTGCGGCGTGTTAAAAAAGATGTAATTTCTGAGCTGACTAGCAAAACTGAAATTACCGTGCACTGCAAGTTAAGTTCTCGGCAGCAAGCTTTCTATCAAGCAATTAAGAACAAGATATCTCTTGCTGAATTGTTTGATAGTAATCGTGGACAGCTGAATGAGAAGAAAATCCTGAATTTAATGAACATTGTTATTCAACTGAGGAAGGTTTGCAACCATCCAGAGTTGTTTGAAAGGAGTGAGGGAAGCACATACCTTTACTTTGGAGAGATTCCAAATTCCCTTCCTCCTCCTCCATTTGGGGAGTTAGAGGATGTATATTATTCTGGTGGCCACAACCCCATCTCATACAAGATACCAAAACTTGTGTATCAAGAAATTATGCGGAGTTCTGAAACTCTCGGTTCAGCTGTTGGTCATGGTATCTGCAGAGAATCTTTTCAGAAGTATTTTAATATTTTTAGACCAGAAAATGTTTATCAATCTGTCTTTTCAGAAGATATGCATGTTAAAAGTGGAACCTTTGGGTTTACTCATTTGATGGATTTATCTCCACAAGAGGTGACATTTCTTGTTACTGGTTCTTTTATGGAGAGACTATTATTTTCTATGATGAGGTGGGAACAAAAATTCATTAATGAAGTTGTAGAATTTCTTACGGAGACCATAGACGATGATTTGGAATGTAGTAACCTTGAAAAAGGCAAAGTGAGAACTGTCACACGTATGTTATTGGTGCCGTCGAGATCCGAGACTAAGTTTCTACAGAACAGATTGCCAACTGGACCCAGCCATGCTCCTTTTGAGGCCTTAGTTGTCCCACATCAGGAGAGGATTTTATCAAATGCAAGGCTTCTTCACTCAGCTTACACATATATCCCACAAAGTAGAGCACCCCCAATTGGTGCTCACTGCTCTGATAGGAACTTCTACTATAAGATGATTGAGGAACTACATGATCCATGGGTTAAGAGGTTGTTAGTGGGGTTTGCACGTACGTCTGATTGTAATGGGCCTAGAAAGCCAGATGGTTCTCATCATTTAATTCAAGAGATTGACTCTGAACAACCTGTTTGTAAACCTGCTCTTCAGTTAACTCACAGTATTTTTGGATCTTCTCCACCTATGCGAAATTTTGATCCAGCAAAATTGCTTACTGACTCTGGGAAGCTTCAAACGCTTGATATATTATTGAAACGTTTACGAGCCGGAAATCATCGTGTTCTCTTGTTTGCTCAGATGACCAAGATGCTGAATATTTTGGAGGACTATATGAACTATAGAAAATATAAGTATTTTAGACTTGATGGGTCAACATCTATTCAGGACCGCAGAGACATGGTCAGAGACTTTCAGCATAGGGCTGATGTTTTCGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATTAACTTGACAGCTGCTGACACGGTCATATTTTATGAGAGTGATTGGAATCCAACATTGGATCTACAGGCAATGGATAGAGCTCATCGTTTGGGTCAGACAAGAGATGTTACTGTCTACCGACTTATATGTAAAGAGACAGTCGAAGAGAAGATTCTTCTCAGAGCTAGTCAGAAAAGTACTGTACAGAACCTTGTCATGACTGGTGGTTCTGTTGGAGGTGATCTTTTAGCACCTGAGGATGTGGTATCTTTGCTTCTGGATGATGTTCAGTTGCAGCAGAAATTTCAAAATATAACTGTCCAGGTAAGGGATAAGCAAAAGAAAAAACTGCCTATGAAGGGTATTTTGGTAAATGAAGAAGGTGACGCATCTCTGGAAGATTTATCAAACTCTGTAGCCCCAACAGATGATCTTGCCTTGGACCCAGAGGGATCAAAGTCCAGTAATAAAAAGAGAAAAGCTACCTCAGATAAGAAAACTTTGAGGCCAAAGAATTCTCAGAAGACTAGTGAATTTGATGCCACGCTTATGGACAACGAATTGGATGATGTCCACCTAAATACTGATCCTGTAGTTCAGAAACCCAAAAGGCCAAAGAGAATAAAGAAAAATGTGAATGAAATGTATGAAGATACCTTTCCTGGGACAGCTACCACAGTGGCCCCAGAGCAGACCCAATTTCAACCTCCACATGATGAAGGTTCCAAAATAGAATCCGGCCAAGACACCTAA 4563 0.4067 MDHRTYSTLFNLQSLVNFELPEQDDDFEYYGNSSQDESRNTRGGAIGNNGNGNVSGRDLNLLKKRRLSRNSENEERSGFEGTRMMEERYRSMLGDHIKKYKRRFKGASSNPGSNQVVVPFVKSNNGLKAPKLGNERRRGLRDEETISEWINNSNAQKPGNFLDTDFIQQHRTDRVMYEPASVYIGDGIAYKIPPIYDKLAATMNLPSLSDIHIEDFYLKGTLDLGSLAEMMASDKRPGNRNRAGMGETLSQYESLQARLKDTPASNSTHKFSLKISDADLNSSIPEGAAGSIKRYILSEGGILQVYYVKVLEKGDTYEIIERSLPKKQKITKDPALIEKEEMEKLGRIWVNIVRRDIPRHHRNFTTFHRKQLVDAKRASENCQREVKMKVSRSLKWTRTASIRTRKLARDMLLFWKRIDKEMLEVRKKEEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSISSEALTMVDESTNDENALINSLADGPSGEEDPEEVELKKEALKAAQEAVSKQKMLTSAFDTECLRLRQAGESDSLQPEVSGASNIDLKTPSTMPVASTVRTPELFNGILKDYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLIVAPASVLNNWNEELERFCPELKILPYWGGLSERTVLRKSMNPKDLYRREAKFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSANSIRWKTLLSFNCRNRLLLTGTPVQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSIIKPFMLRRVKKDVISELTSKTEITVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKKILNLMNIVIQLRKVCNHPELFERSEGSTYLYFGEIPNSLPPPPFGELEDVYYSGGHNPISYKIPKLVYQEIMRSSETLGSAVGHGICRESFQKYFNIFRPENVYQSVFSEDMHVKSGTFGFTHLMDLSPQEVTFLVTGSFMERLLFSMMRWEQKFINEVVEFLTETIDDDLECSNLEKGKVRTVTRMLLVPSRSETKFLQNRLPTGPSHAPFEALVVPHQERILSNARLLHSAYTYIPQSRAPPIGAHCSDRNFYYKMIEELHDPWVKRLLVGFARTSDCNGPRKPDGSHHLIQEIDSEQPVCKPALQLTHSIFGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYFRLDGSTSIQDRRDMVRDFQHRADVFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTRDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLQQKFQNITVQVRDKQKKKLPMKGILVNEEGDASLEDLSNSVAPTDDLALDPEGSKSSNKKRKATSDKKTLRPKNSQKTSEFDATLMDNELDDVHLNTDPVVQKPKRPKRIKKNVNEMYEDTFPGTATTVAPEQTQFQPPHDEGSKIESGQDT 1520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03316 1520 SMART ultradead3 577 772 IPR014001 -
Trre13g03316 1520 SMART helicmild6 1225 1308 IPR001650 -
Trre13g03316 1520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 565 809 IPR027417 -
Trre13g03316 1520 MobiDBLite consensus disorder prediction 33 56 - -
Trre13g03316 1520 MobiDBLite consensus disorder prediction 1491 1520 - -
Trre13g03316 1520 Gene3D - 577 818 IPR038718 -
Trre13g03316 1520 MobiDBLite consensus disorder prediction 26 81 - -
Trre13g03316 1520 ProSiteProfiles DBINO domain profile. 348 473 IPR020838 GO:0003677
Trre13g03316 1520 MobiDBLite consensus disorder prediction 1491 1509 - -
Trre13g03316 1520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 811 1375 IPR027417 -
Trre13g03316 1520 CDD SF2_C_SNF 1187 1319 - -
Trre13g03316 1520 Gene3D - 1146 1407 IPR027417 -
Trre13g03316 1520 Pfam SNF2-related domain 596 883 IPR000330 GO:0005524|GO:0140658
Trre13g03316 1520 Pfam Helicase conserved C-terminal domain 1199 1308 IPR001650 -
Trre13g03316 1520 Pfam DNA-binding domain 343 471 IPR020838 GO:0003677
Trre13g03316 1520 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1199 1349 IPR001650 -
Trre13g03316 1520 MobiDBLite consensus disorder prediction 59 81 - -
Trre13g03316 1520 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 593 764 IPR014001 -
Trre13g03316 1520 MobiDBLite consensus disorder prediction 1463 1482 - -
Trre13g03316 1520 FunFam DNA helicase INO80-like protein 1167 1417 - -
Trre13g03316 1520 MobiDBLite consensus disorder prediction 1404 1448 - -
Trre13g03316 1520 Coils Coil 420 459 - -
Trre13g03316 1520 PANTHER HELICASE SRCAP-RELATED 117 518 - -
Trre13g03316 1520 FunFam Putative DNA helicase INO80 553 831 - -
Trre13g03316 1520 Gene3D - 819 888 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03316 Trre-Chr13 40607315 40622507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03316 602 891 RAD5 or RAD16-like Gene Family AT5G43530 29.091 2.63e-26 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre13g03316 SNF2_N 2.8e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03316 K11665 - gmx:100780615 2476.82