Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03280 ATGGCGCCAAAAACAAAACACTCTTCAATCTTCATCGGTAACTGCCAAATTACCGTCGAAGCCACTACTTTCACCTGCAATTCTACTTCCAACGACCTCTTAATCACTCTCCCTCGAAGCGGAAAGATCAAAGTATCTGATGTTTCTGCCAACCATAAAAACGCTTCTGAGAAATTCACTCCTGAAGAAAGGGAACGCGAGTTTGTGCTGCTTAATCCGAAAGATGTTGATGATATTAGCAAATCATACATTCAGGAAGTATTACAGATGTATATGAAAGAGCTGCCTGGAATGAATTATGCTGCGAATACTGGAAAGCAGTCGAAGTTTCTTGAGAGATGTGTGACTAATGGGAAATATCGAACACTGCTTCTGAAGTCCAATTTGACCGGGGATTTAGGAAAGGTTATTGCTGCAATTACTTTTCAAATCATCCCTGCAGATAGAGAATATGCAGAGATCCCACTTGCAGCTGTCAATGCAATCTATCAACGGAAGGGTATTGGTCATCTGTTGTTTCTAGAGCTACGGAAGAGACTTCAAAATGTTGGCATTCGCTCCATTTTCTGTTGGGGAGACAAAGAATCTGAAGGATTTTGGCTTAAACAGGGTTTTTCATCAATAGCACAGGTGGATACAAAAGGTAGAGCCCGCAGGTTACCTGTAAAAGCTGATATTCGCAAAGCATTATGCTTTCCTGGTGGTTCAACTCTCATGATTTTCCACCTAAGGAAGGAATTGCTTGATGACAATGCTAACTCTGGGAAGTGTATCCCCTCACAGCCTCATCAGAATTCCTTCACACCTGCAATTGTTGAAAATGAGGGGCCTGAATCTTCAGGGGAACTACTCGTTAATTTGAAAACTTCCCGTAGACCAAGCACAAATCAAAGTAAACCTAAGGCTTTGGTAAAAGTTGGATCTTCACCAGGACATGGAAAACTTACTGGATTTGACAGTCAGAATCCTAAGAACTGCTGCAATGACACTGTTGATTTTGCCAGAACAAATGATGATAGCCAAGCAAATGGTGCAGATTGTTCCCAGGATGGAAATTATGCTAATGTAGTGAATTGTTCTCAATCTATAAAAGTTGCAAAGAGGGCCTGGGAAGCCTCTTCATCCTCGTTGAAATCAAAGAGAGTGAGGGTAAGCCAGATAGCTGACTGTCATTCAGATTCTAGCTGGGGTTTTGTCTCAGAGGCTGATAGGACCAATCCTTGTTCTTCGGAAGCCCCTCATGGCAATACTGCAATTACAAAGTACTCAACAAAATGTATTGGAGACCATATGCATGCAGAAGCTCCCATCAGCCTAAAACTGCCACCAACTAAACAATGCTTTAGAATCATGTTGATGAATATCACTGATGATGCTAAGAAAACACAGCTTGCAAAGGTGATTGAAGACCTTGGTGGTACTATTGCCTCTGATGGAAGCACAACCACACATGTTGTCACAGGACAAGTGAGAAAAACTCTGAATTTCTGTACCGCCCTCTGTTCTGGTGCTTGGGTGGTCTCGTCAAGTTGGTTAAAAGAAAGTTTTCGTGAAGGCAGATTTGTTGATGAATCACCTCACATTCTGAATGATAAGGATTATTTGTTGAAGTATAATTCGGATTTAAGAAGTGCAGTTTTCCGAGCAAAAGCTTGTCCCCGTGCTTTATTTAAGGGGTATAATATATGTATTGCAGCTAAAGTTCGAACTTCTGCAAAAACTCTGTCTGCTATTGTTAGGTCTGCTGGCGGTAATGTTATTAGTGGACTCCAAAAAGTAAATGAAGCATCAACAACAATCTTTGTGACTTGTGAAGAAGATATTGAAGAAGCAATTATGGCTTCAAAGAAAGGTATAAGGACTTTCAGCAGTGAGTGGTTTATGAACTGTGTCATGAGACAAGAGCTTGACTTGGAAGCCCCACAATGTGTAGAGTCCTTATGA 1944 0.412 MAPKTKHSSIFIGNCQITVEATTFTCNSTSNDLLITLPRSGKIKVSDVSANHKNASEKFTPEEREREFVLLNPKDVDDISKSYIQEVLQMYMKELPGMNYAANTGKQSKFLERCVTNGKYRTLLLKSNLTGDLGKVIAAITFQIIPADREYAEIPLAAVNAIYQRKGIGHLLFLELRKRLQNVGIRSIFCWGDKESEGFWLKQGFSSIAQVDTKGRARRLPVKADIRKALCFPGGSTLMIFHLRKELLDDNANSGKCIPSQPHQNSFTPAIVENEGPESSGELLVNLKTSRRPSTNQSKPKALVKVGSSPGHGKLTGFDSQNPKNCCNDTVDFARTNDDSQANGADCSQDGNYANVVNCSQSIKVAKRAWEASSSSLKSKRVRVSQIADCHSDSSWGFVSEADRTNPCSSEAPHGNTAITKYSTKCIGDHMHAEAPISLKLPPTKQCFRIMLMNITDDAKKTQLAKVIEDLGGTIASDGSTTTHVVTGQVRKTLNFCTALCSGAWVVSSSWLKESFREGRFVDESPHILNDKDYLLKYNSDLRSAVFRAKACPRALFKGYNICIAAKVRTSAKTLSAIVRSAGGNVISGLQKVNEASTTIFVTCEEDIEEAIMASKKGIRTFSSEWFMNCVMRQELDLEAPQCVESL 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03280 647 CDD NAT_SF 134 191 - -
Trre13g03280 647 Pfam Acetyltransferase (GNAT) family 128 205 IPR000182 GO:0016747
Trre13g03280 647 Gene3D BRCT domain 439 553 IPR036420 -
Trre13g03280 647 SUPERFAMILY BRCT domain 449 531 IPR036420 -
Trre13g03280 647 SMART BRCT_7 442 519 IPR001357 -
Trre13g03280 647 SMART BRCT_7 554 634 IPR001357 -
Trre13g03280 647 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 70 211 IPR016181 -
Trre13g03280 647 CDD BRCT_PAXIP1_rpt6_like 556 637 - -
Trre13g03280 647 Gene3D - 67 219 - -
Trre13g03280 647 MobiDBLite consensus disorder prediction 290 317 - -
Trre13g03280 647 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 448 528 IPR001357 -
Trre13g03280 647 SUPERFAMILY BRCT domain 553 636 IPR036420 -
Trre13g03280 647 Gene3D BRCT domain 554 645 IPR036420 -
Trre13g03280 647 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 61 234 - -
Trre13g03280 647 Pfam BRCA1 C Terminus (BRCT) domain 556 631 IPR001357 -
Trre13g03280 647 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 74 227 IPR000182 GO:0016747
Trre13g03280 647 ProSiteProfiles BRCT domain profile. 552 636 IPR001357 -
Trre13g03280 647 ProSiteProfiles BRCT domain profile. 450 529 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03280 Trre-Chr13 40172704 40184483 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Trre13g03280 RTT107_BRCT_5 1.3e-06 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03280 - - psat:127126386 967.222