Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03268 ATGTGGCCTAAGAAAGTGGCAATTGATTTTCAGATCCCATTGGCAGTGATTTTAACCATTCCACCTTTTAGCTATCCTGTCAATCTTGCTGTCTCAAAATTTACCGTTGAACAAGGTGAAAGAGTTCTTGTTACAGCACCTACCAATCCAGCTGTTGATAATATGGTTGAAAAGCTTTCAAATGTTGGAATAAATATTGTTCGGGTTGGAAATCCAGCTCGTATATCAAAAACAGTAGCATCAAAGTCTTTGGCAGAAATTGTAAATGCGAAGATGGCACCTTTTCGCGAAGAGTTTGAGACGAAGAAGTCTGATCTAAGGAAAGATCTAAGGCATTGTTTAAAGGATGATTCATTGGCTGCAGGCATACGCCAACTTCTGAAAAAGCTAGCAAAGTCGCTAAAGAAACAGGTGAAACACGGTATTCTTGCTGGTGATCAATGCCAATTACCTCTTGTGATATTTTCTAGAAAGGCGTTAGAAGGTGGTTTAGGAATATCGCTATTGGAGAGAGATGCAACTCTGCATGAAGGGATTCTCACCACGACGTTAACTACACAGTACCAGCATCTAGATCCGACAGGAACTGGCTCATTGTACAATGAAGGAGAAGCTGATATAGTTTTGCAGCATGTTTTTTCATTAATTTATGCTGGTGTCAGCCCAAATGCTATTGTAGTTCAGTCCCCTTATGTTTCTCAAGTTCAACTTTTGAGAGACATGCTTGATGGAGTTCCAGAAGCTGCTGGTACCGAAGTTTCCACAATTGATAGTTTTCAAGGTCGGGAAGTTGATGCTGTAATTTTATCGATGCCTCCAACTCAGTTTGCTTCTTGGATATGCATATCCTGA 852 0.4038 MWPKKVAIDFQIPLAVILTIPPFSYPVNLAVSKFTVEQGERVLVTAPTNPAVDNMVEKLSNVGINIVRVGNPARISKTVASKSLAEIVNAKMAPFREEFETKKSDLRKDLRHCLKDDSLAAGIRQLLKKLAKSLKKQVKHGILAGDQCQLPLVIFSRKALEGGLGISLLERDATLHEGILTTTLTTQYQHLDPTGTGSLYNEGEADIVLQHVFSLIYAGVSPNAIVVQSPYVSQVQLLRDMLDGVPEAAGTEVSTIDSFQGREVDAVILSMPPTQFASWICIS 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03268 283 Gene3D - 170 276 IPR027417 -
Trre13g03268 283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 271 IPR027417 -
Trre13g03268 283 Pfam AAA domain 192 271 IPR041679 -
Trre13g03268 283 CDD SF1_C_Upf1 195 271 IPR047187 -
Trre13g03268 283 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 197 275 - -
Trre13g03268 283 Pfam AAA domain 35 116 IPR041677 GO:0004386
Trre13g03268 283 Gene3D - 35 137 IPR027417 -
Trre13g03268 283 Gene3D - 139 169 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03268 Trre-Chr13 39998329 40000619 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03268 5 52 Aldehyde Dehydrogenase Gene Family AT2G24270 48.000 2.90e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03268 - - lsv:111920927 199.904