Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03258 ATGAATGCTAATATGATTGCGTTCAATCAAGACAATCTCACGAGATCGATCGATCTAGCACGACATTGCTTTGGAGAATTTTCGATGGCTAATGTTCAAGCCAATACAGTTATGGAAGATCAAAGTAATGTCGAAGTTGCTGCTCGCAATGCACTCTTTCTTGGAGTTTATGACGGCCATGGTGGCGCCAATGCATCGCTATATGTTCTTAATAACCTCTTCGGAAATTTATTGAGGTTTGCTCATGAGAATGATAATACCGCTATTACTGCGGCAAATTTGAGGAATGCGGTTTTGGAAACTGAACGTGGATTTTTGGAATATGTGGAAGCGAATATTGATCAAATTCAGCAGATCGGGAAAATTGGTTCATGCTGTCTTGCTGGTGTAGTTTGGAAGGATAAGCTATATGTTGCGAATCTTGGAGATTCGCGTGCTGTGATTGGTTCTGTGACTAACAGAGGAATCGAAACTACACAATTGACAACAGATCACAATTGTAATAATCAGGTTGTTCGACAAGAACTCCACGCATTGCATCCCGATGATCCTACCATTGTGATGGAGAGGAACGGAGCGTGGCGCGTCAAAGGCATCATTATGGTGAGTAGAAGTATTGGTGATGCATATTTGAAGAGCCCTGATTTCCCCCTACAATATGAACCACCTGTTCCTCCACCTTTTACTAGAGGGGTGTTATCTGCTGAACCACAGATTGTTACTAGAACTATAGCAGATACTGATAAGTTTGTTATATTTGCTTCTGATGGACTTTGGGAGCTCATGTCAAATGAAGTAGCAGGTCAAATTGTTCATAGCAGTCCAAGACATGGAATTGCGAAGAGGCTTCTGAGTCATGCTCTAGAAGAAGCTGCTAGAAGATATAATCTTAGCTATAGTGAGATGCAGACTTTTCCTACGGGACGTGAAAATCTGGGCAGGAGGACTTTTCATGATGATATTAGTGTCATTGTTATCTTCCTGGACAAGAAAACAATTTTCAGGAAGTCAGTGGAAAATCGGTCCTATAGAGGCTCACATGCCCAGACTCTACCTTCTGATTTTACAGGTTCTAAATTACTTGATTCGAAATTTAAGGGTCTGAAGGACAGAATTAAAAAACAGTTCAAGGGATCAAGCTCGAAGGGTCAGAGCTCTAGGGGTCCTGAGGGAGTGGAATTTCTTGATATGGGTATGGCTGACAGATCTAAGAAGCAGACTGATCGTGATGAAGAGGCTGAGAATGAAGGTGACCAGAGTTCTCGGGTAAAAAGCCGTTGGGACAAGCTCAAAAACAAGTTTACACCAAAGAAGCTTACACCAAAGAAGCTTTCAATTAAAATGGAATAA 1350 0.4156 MNANMIAFNQDNLTRSIDLARHCFGEFSMANVQANTVMEDQSNVEVAARNALFLGVYDGHGGANASLYVLNNLFGNLLRFAHENDNTAITAANLRNAVLETERGFLEYVEANIDQIQQIGKIGSCCLAGVVWKDKLYVANLGDSRAVIGSVTNRGIETTQLTTDHNCNNQVVRQELHALHPDDPTIVMERNGAWRVKGIIMVSRSIGDAYLKSPDFPLQYEPPVPPPFTRGVLSAEPQIVTRTIADTDKFVIFASDGLWELMSNEVAGQIVHSSPRHGIAKRLLSHALEEAARRYNLSYSEMQTFPTGRENLGRRTFHDDISVIVIFLDKKTIFRKSVENRSYRGSHAQTLPSDFTGSKLLDSKFKGLKDRIKKQFKGSSSKGQSSRGPEGVEFLDMGMADRSKKQTDRDEEAENEGDQSSRVKSRWDKLKNKFTPKKLTPKKLSIKME 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03258 449 PANTHER PROTEIN PHOSPHATASE 24 326 IPR015655 GO:0004722|GO:0006470
Trre13g03258 449 Gene3D - 6 339 IPR036457 -
Trre13g03258 449 MobiDBLite consensus disorder prediction 374 449 - -
Trre13g03258 449 CDD PP2Cc 24 328 IPR001932 -
Trre13g03258 449 ProSiteProfiles PPM-type phosphatase domain profile. 26 328 IPR001932 -
Trre13g03258 449 SMART PP2C_4 11 326 IPR001932 -
Trre13g03258 449 Pfam Protein phosphatase 2C 47 291 IPR001932 -
Trre13g03258 449 SUPERFAMILY PP2C-like 21 329 IPR036457 -
Trre13g03258 449 ProSitePatterns PPM-type phosphatase domain signature. 53 61 IPR000222 GO:0043169
Trre13g03258 449 MobiDBLite consensus disorder prediction 397 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03258 Trre-Chr13 39582497 39584605 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03258 13 356 PP2C-type Phosphatase Gene Family AT5G06750 47.740 4.59e-101 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03258 K01102 - rvl:131322871 318.931