Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03257 ATGGCGATGAATATGAATGCTAATATGATTGCGTTCAATCAAGACAATCTCACGAGATCGATCGATCTAGCACGACATTGCTTTGGAGAATTTTCGATGGCTAATGTTCAAGCCAATACAGTTATGGAAGATCAAAGTAATGTCGAAGTTGCTGCTCGCAATGCACTCTTTCTTGGAGTTTATGACGGCCATGGTGGCGCCAATGCATCGCTATATGTTCTTAATAACCTCTTCGGAAATTTATTGAGGTTTGCTCATGAGAATGATAATACCGCTATTACTGCGGCAAATTTGAGGAATGCGGTTTTGGAAACTGAACGTGGATTTTTGGAATATGTGGAAGCGAATATTGATCAAATTCAGCAGATCGGGAAAATTGGTTCATGCTGTCTTGCTGGTGTAGTTTGGAAGGATAAGCTATATGTTGCGAATCTTGGAGATTCGCGTGCTGTGATTGGTTCTGTGACTAACAGAGGAATCGAAACTACACAATTGACAACAGATCACAATTGTAATAATCAGGTTGTTCGACAAGAACTCCACGCATTGCATCCCGATGATCCTACCATTGTGATGGAGAGGAACGGAGCGTGGCGCGTCAAAGGCATCATTATGGTGAGTAGAAGTATTGGTGATGCATATTTGAAGAGCCCTGATTTCCCCCTACAATATGAACCACCTGTTCCTCCACCTTTTACTAGAGGGGTGTTATCTGCTGAACCACAGATTGTTACTAGAACTATAGCAGATACTGATAAGTTTGTTATATTTGCTTCTGATGGACTTTGGGAGCTCATGTCAAATGAAGTAGCAGGTCAAATTGTTCATAGCAGTCCAAGACATGGAATTGCGAAGAGGCTTCTGAGTCATGCTCTAGAAGAAGCTGCTAGAAGATATAATCTTAGCTATAGTGAGATGCAGACTTTTCCTACGGGACGTGAAAATCTGGGCAGGAGGACTTTTCATGATGATATTAGTGTCATTGTTATCTTCCTGGACAAGAAAACAATTTTCAGGAAGTCAGTGGAAAATCGGTCCTATAGAGGCTCACATGCCCAGACTCTACCTTCTGATTTTACAGGTTCTAAATTACTTGATTCGAAATTTAAGGGTCTGAAGGACAGAATTAAAAAACAGTTCAAGGGATCAAGCTCGAAGGGTCAGAGCTCTAGGGGTCCTGAGGGAGTGGAATTTCTTGATATGGGTATGGCTGACAGATCTAAGAAGCAGACTGATCGTGATGAAGAGGCTGAGAATGAAGGTGACCAGAGTTCTCGGGTAAAAAGCCGTTGGGACAAGCTCAAAAACAAGTTTACACCAAAGAAGCTTACACCAAAGAAGCTTTCAATTAAAATGGAATAA 1362 0.4156 MAMNMNANMIAFNQDNLTRSIDLARHCFGEFSMANVQANTVMEDQSNVEVAARNALFLGVYDGHGGANASLYVLNNLFGNLLRFAHENDNTAITAANLRNAVLETERGFLEYVEANIDQIQQIGKIGSCCLAGVVWKDKLYVANLGDSRAVIGSVTNRGIETTQLTTDHNCNNQVVRQELHALHPDDPTIVMERNGAWRVKGIIMVSRSIGDAYLKSPDFPLQYEPPVPPPFTRGVLSAEPQIVTRTIADTDKFVIFASDGLWELMSNEVAGQIVHSSPRHGIAKRLLSHALEEAARRYNLSYSEMQTFPTGRENLGRRTFHDDISVIVIFLDKKTIFRKSVENRSYRGSHAQTLPSDFTGSKLLDSKFKGLKDRIKKQFKGSSSKGQSSRGPEGVEFLDMGMADRSKKQTDRDEEAENEGDQSSRVKSRWDKLKNKFTPKKLTPKKLSIKME 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03257 453 ProSiteProfiles PPM-type phosphatase domain profile. 30 332 IPR001932 -
Trre13g03257 453 SMART PP2C_4 15 330 IPR001932 -
Trre13g03257 453 PANTHER PROTEIN PHOSPHATASE 28 330 IPR015655 GO:0004722|GO:0006470
Trre13g03257 453 MobiDBLite consensus disorder prediction 378 453 - -
Trre13g03257 453 Gene3D - 5 343 IPR036457 -
Trre13g03257 453 ProSitePatterns PPM-type phosphatase domain signature. 57 65 IPR000222 GO:0043169
Trre13g03257 453 Pfam Protein phosphatase 2C 51 295 IPR001932 -
Trre13g03257 453 CDD PP2Cc 28 332 IPR001932 -
Trre13g03257 453 MobiDBLite consensus disorder prediction 401 439 - -
Trre13g03257 453 SUPERFAMILY PP2C-like 25 333 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03257 Trre-Chr13 39582497 39584836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03257 17 360 PP2C-type Phosphatase Gene Family AT5G06750 47.740 3.65e-101 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03257 K01102 - rvl:131322871 318.931