Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03254 ATGATCAATCAAAAAGCTGAGATTGAATCTCAAGATATGGTTGAAGCACAGGAATCTGTTTCTAGTCATCAAGAAAACAGAGGAAAATTTGAATCTAAGAAGAAAATGAAGAAAGTGAAGTCAATGAAGCTTCAAAGATTGTCAAGCAGAGGAAGAAAACCACAGCATGATCACAAATTTCCCATCCTTTCATCTGTTGGCACAGTTGAAATTGCAGATGCATCACCTAATTACATGAAGGGCACTAGTAGTAGTAGCTCACATGCAAAGGAAAGTTTTCAGATTGAAGAAAGAGTTACCACAAACACAAGTTTAACAAGAGTGACTACTTTGAAAGTGAAGAGAAGTTTGACTAGAAAGTTATCTGGAAGGACTGAACAGAAGAGGAAACTGAAGCCATCAAGATCAGTCAAGCTTGCAACTGTCAAGGGATCTAAATCAATAACTCTATATTCTGATTCTGAATCCATTCATGGCAGTGATGGCAAGAATAGGAATAGTACAAGTGATGCTGGTAACAAGTCTCAGAGAATCATTACTAGAAGATTAAGCTTAAAGCCTGTGAGGATCTCACCAAAAAAACCAAGTTTGCATAAAGCCACGTGTTCTTCCACTATCAAGGATTCACATTTTTCTGATCAGATTGACCTTCCAGAAGAGGGAAGTAGTTCTCAAGGCGTATCAGCTGTTAGGGTTTGTCCATATACTTACTGCTCTCTTCATGGTCATCACCATGGCGATGTGCCTCCATTGAAGCGCTTTGTGTCGATGAGGAGACGTCAGTTGAAGACACAAAAGTCCGTGAAAAAGGACGGCAGATCAAAGCAAATTGGTAATGCAAGGAAAGCCACTCAGAAAATCAAAACTGTTCAAAGTGAAGATGGAAACTCTCAGTTAAAGAATGTGAAAAATCTGCCAATGGAATCATCGCCTTTTAAGCCTCATGATACTCCATCCACAGTTAATGAAAGTGACACTTCAACCAAAGACAACAATATGGACCCAGATTATGAAATGTTGCAGAAGAGTTTTGCACAAGAAGAGCCTAAACCTGGTAGTACTACTACTAGTGTAGCATATGGATTGCAGGAAAGAGACAAGAAATATATAAAAAAGTGGCATTTGATGTATAAGCATGCTGTATTAAGTAACACGGGGAAATGTGAAAATAAGGTTCCGTTTGTTGAGAATGACAAAAAAGGTAAAGAGGAAGAATATGCTCTTGCATTTAATGGAGGAAACAACTCTTCTTGTCAAAGTTATAGTGAAACAGATTCAGATATGGATGATGAAAAGAAGAATGTAATTGAGCTGGTGCAGAAAGCATTTGATGAAATTCTTCTCCCTGAAGTTGAAGACCTTTCCTCTGATGATCATTCAAAATCAAGAGGCAATGAAAAAGATGAGGTACTCTTAGAAGAGAGTGAAGGTAAGATTGAAGAAAGGAATGCCACAACTTTCGCAGAATCTCCTAAAGAAGTGCAGAAGATGGAGAGCAAACCAAAAAGCTGGAGCCATCTGAAAAGGGTAATCCTCCTGAAAAGGTTTGTAAAGGCATTAGAGAAGGTAAGAAACATCAACCCTAGAAGACCAAGACAGTTGCCTTCAGATGCCAACTTCGAAGCGGAAAAAGTTTTGCTTAATCGACAAACAGCAGAAGAGAGGAAAAAGTCGGAGGAGTGGATGCTTGACTATGCACTTCAAAAGGTTATTTCTAAACTTGCACCTTCTCAAAGGCAAAAAGTGACGCTTTTAATAGATGCTTTTGAAACAATTCGACCATGTCAAGATGCTGAAAATGGATCTCGATCTACTGCGACAGTGGAGTCTCAAGAAAATCCGATTCAATCACTCGATGCTTCCTCAAATCATAGCAAGGAAGAAATAAACGACGAAAGTGATTGTGAGGTAACTGAAAGTGCAAGTACTGTGGAATCAACATTAACAGATGTAGTCAAGTCTGCTGTTTTCAATGTGGGGATATCGGAGGAGGAAGTAACAACCAAAGGCGAAAATATGGAGCCAGATCATAAAGTGCCGCAGAAGATTTTTGTGCAGGAAGAGCCTAAACATGGTAGTAGTTCTACTGGTGTGCCATATGGAGTGCAGGAAGGAGATCAGAAATATATAAAAAAGTGGCATCTGATGTTTAAGCATGCAGTATTAAGTAACACGGGAAAATGCGAATATGAAAAAGAAGGTAGAGGGGAAGACGGTATCACATTCAATGTAGGAAAAAGCTCTTGTCACAATTATTTTGAAACAGATTCGGATATGGATGATGAAAAGAAGAATGTTATTGAGCTTGTGCAAAAAGCATTTGATGAAATTCTTCTCCCTGAAGTTGAAGACCTCTCTTCTGATGACCATTCAAAATCTAGAAGCTATGGTTCAGAAGAAATTAATACCACAACTTTCGCAGCATCTCCAAAAGAATCACAGAAGATGGAGAACAAACCGAAAAGCTGGAGCCATCTGAAAAAGGTAATCCTCTTGAAAAGGTTTGTAAAGGCACTAGATAAGGTAAGAAACATCAATCCAAGAAGCCGAAGACAATTGCCTTTCGATGCCAACTTCGAAGCAGAAAAAGTTTTTCTTAACCGCCAAACATCGGAAGAGAGGAAAAAATCGGAGGAGTGGATGCTTGACTATGCACTTCAAAAGGTTATTTCTAAACTAGCACCTGCTCAAAGACAAAAAGTGACACTTCTCATTGAAGCTTTTGAAACAATTCGACCATATCAAGATGCTGAAAATGGACCTCAGTCCACTGTAACAGTGGAATCTCAAGAAAATCCGATTCAATCATTTGATGCTTCCTCAAATCATAGCAAGGAAGAAATAATGGAAGGAAGAGATTTTGAGGTAACTGAGAGAGCAAGGAATGACAAGAATACGACTGCATGTAATGAAAATGAGGAAAGTGCTGCTGTCGAGTCAACATCGACAGATGTAGTCCAGTTTCCTGTTTTCAATGTGCGGATATTGGAGGAGGAAGTAACAACCAAAGGCGAAAATATGGAGCCAGATCATATAGTGCCGCAGAAGATTTCCGTGCAGGAAGAGCCTAAACATGGTAGTAGTTCCACTGGTGTGCAGGAAGGAGATCAGAAATATATAAAAAAGTGGCATTTGATGTATAAGCATGCAGTATTAAGTAACACAGGAAAATGCGAAAATGAGCCTCCGTTTAGTGGGAAGGACAACGAAGGTAGAGAGGAAGATGATGTCACGTTCAGTGGAGGGAAAAGCTCTTCTTGTCACAATTATAGTGAAACAGATTCAGATATGGATGATGAAAAGAAGAATGTAATTGAACTTGTGCAAAAAGCATTTGATGAAATTCTTTTACCTGAAGCTGAAGACCTCTCTTCTGATGATCATTCAAAATCTAGAAGCTATGGTTCAGAAGATGTACTCTTAGAAAAGAGTGAAGGTAAAGAAGAAGAAAGGAGTACCACAACTTTCACAGAATCTCCTAAAGAATCATTGAAGATGGAGAACAAACTGAAAAGCTGGAGCTATCTGAAAAAGGCCATCCTCTTGAAAAGGTTTGTAAAGGCATTAGATAAGGTAAGAAACATCAAACCAAGAATACCAAGACAATTGCCTTCAGATCCCAACTTTGAAGCGGAGAAAGTTTTTCTTAACCGCCAAACAGCGGAAGAGAGGAAAAAATCGGAGGAGTGGATGCTTGACTATGCACTTCAAAAGGTTATTTCTAAACTTGCACCTGCTCAAAGACAAAGAGTGAGACTTCTAATAGAAGCTTTTGAAACAATTCGGCCATTTCAAGATGCTGAAAAAGGACCGCGGTCTTCTGTGACGGTGGAATCTCAGGAAAATCCAGTTCAATCGCTTGATTCTGCTTCAAATCATAGAAAGGAAGAAATAACAGACGAAAGAAATTCTGTTTACTTGGATAAGTCATTGCTTGGAAAAGTATCTTGTTCTAATGATAGTACTATGAAATTTTCAGATAAATCTAGCGACAATCCAATGCATGAACTTTGCAATCCTATTAAACCAGTGGAAACTGTAAGCAGTTGTCATGAGGAGGCTCCAACCATTGGAATAGTTGAGGAAGTTCCAGAACATTTGGTATTGGATTTGAATGCAGAAAATCCAAGTATCAAATCTGAGTCACCTGGAAGATATTGTGAAACCAAGAATGTCATTGGTGATAATAGTGAAAAAATTTCTTTGACAAAAAGCTTAATCCTAAATGGTCTTGTCAGATCACTTAAAGCTAATTTGGTTGTTCCAGAAGCATCGTCAGACCAACTAGACGAATCGACAAAAGGCAGAAAAGATATGATTGAAAAAGATCAACTGGAAACATCCGATGCTCCTACTAGTGCTGTTGTAGAATCTGAGACTCAGGTAGAGAAACAAGGCAACACAGGATTGTGGTTCATGGTGTATAAGCACATGGTATCAGATATGACTGAAAACAATTCCAAGACATTAACTGATGTAGCAGATGAGAAAGAGTCAAAGTATGAAGGCAGCATAAAAAGAGAAAATTCTGCCTCTGATGAAAGTACACCTGTGACTAATCAACAAGATGTGAACCTCAACGATCGTGTTCTAGAGGATCGCGAAGTTGAACTTCGACAGAACGAAGCAATCAAGATGGTAGAAGAAGCAATTGATTCAATCCTTCCAGACAGACAGCCACTTACCGACAACAACACAATTGACAGAACTGAAAGAATGTACAGTGGAGGCTTGAACCAAAAGGAAGAAAAGATGGAATCTGGAAATGGAATAGCGGTGGAACAAAAAGAAGATTCGGTATCGAAGGAGGGAAACAAACCAAGCCAGAAATTATCTAGAAATTGGAGCAATCTTAGAAAAGTGGTACTGCTTAAGAGATTCATCAAGGCATTGGAAAAAGTAAGGAAATTTAACCCAAGAGAGCCTAGATATCTACCATTAGAAGCTGATTCAGAAGATGAAAAAGTTCAACTGAGGCATCAAGATATGGCAGAGAGAAAAGGCACAGAAGAATGGATGCTTGATTATGCACTTAGACAGGTTGTTTCCAAATTAACTCCAGCTAGGAAGAGAAAGGTGGAGCTGTTAGTGGAAGCTTTCGAGACCGTAAAAAAATGA 5118 0.3888 MINQKAEIESQDMVEAQESVSSHQENRGKFESKKKMKKVKSMKLQRLSSRGRKPQHDHKFPILSSVGTVEIADASPNYMKGTSSSSSHAKESFQIEERVTTNTSLTRVTTLKVKRSLTRKLSGRTEQKRKLKPSRSVKLATVKGSKSITLYSDSESIHGSDGKNRNSTSDAGNKSQRIITRRLSLKPVRISPKKPSLHKATCSSTIKDSHFSDQIDLPEEGSSSQGVSAVRVCPYTYCSLHGHHHGDVPPLKRFVSMRRRQLKTQKSVKKDGRSKQIGNARKATQKIKTVQSEDGNSQLKNVKNLPMESSPFKPHDTPSTVNESDTSTKDNNMDPDYEMLQKSFAQEEPKPGSTTTSVAYGLQERDKKYIKKWHLMYKHAVLSNTGKCENKVPFVENDKKGKEEEYALAFNGGNNSSCQSYSETDSDMDDEKKNVIELVQKAFDEILLPEVEDLSSDDHSKSRGNEKDEVLLEESEGKIEERNATTFAESPKEVQKMESKPKSWSHLKRVILLKRFVKALEKVRNINPRRPRQLPSDANFEAEKVLLNRQTAEERKKSEEWMLDYALQKVISKLAPSQRQKVTLLIDAFETIRPCQDAENGSRSTATVESQENPIQSLDASSNHSKEEINDESDCEVTESASTVESTLTDVVKSAVFNVGISEEEVTTKGENMEPDHKVPQKIFVQEEPKHGSSSTGVPYGVQEGDQKYIKKWHLMFKHAVLSNTGKCEYEKEGRGEDGITFNVGKSSCHNYFETDSDMDDEKKNVIELVQKAFDEILLPEVEDLSSDDHSKSRSYGSEEINTTTFAASPKESQKMENKPKSWSHLKKVILLKRFVKALDKVRNINPRSRRQLPFDANFEAEKVFLNRQTSEERKKSEEWMLDYALQKVISKLAPAQRQKVTLLIEAFETIRPYQDAENGPQSTVTVESQENPIQSFDASSNHSKEEIMEGRDFEVTERARNDKNTTACNENEESAAVESTSTDVVQFPVFNVRILEEEVTTKGENMEPDHIVPQKISVQEEPKHGSSSTGVQEGDQKYIKKWHLMYKHAVLSNTGKCENEPPFSGKDNEGREEDDVTFSGGKSSSCHNYSETDSDMDDEKKNVIELVQKAFDEILLPEAEDLSSDDHSKSRSYGSEDVLLEKSEGKEEERSTTTFTESPKESLKMENKLKSWSYLKKAILLKRFVKALDKVRNIKPRIPRQLPSDPNFEAEKVFLNRQTAEERKKSEEWMLDYALQKVISKLAPAQRQRVRLLIEAFETIRPFQDAEKGPRSSVTVESQENPVQSLDSASNHRKEEITDERNSVYLDKSLLGKVSCSNDSTMKFSDKSSDNPMHELCNPIKPVETVSSCHEEAPTIGIVEEVPEHLVLDLNAENPSIKSESPGRYCETKNVIGDNSEKISLTKSLILNGLVRSLKANLVVPEASSDQLDESTKGRKDMIEKDQLETSDAPTSAVVESETQVEKQGNTGLWFMVYKHMVSDMTENNSKTLTDVADEKESKYEGSIKRENSASDESTPVTNQQDVNLNDRVLEDREVELRQNEAIKMVEEAIDSILPDRQPLTDNNTIDRTERMYSGGLNQKEEKMESGNGIAVEQKEDSVSKEGNKPSQKLSRNWSNLRKVVLLKRFIKALEKVRKFNPREPRYLPLEADSEDEKVQLRHQDMAERKGTEEWMLDYALRQVVSKLTPARKRKVELLVEAFETVKK 1705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03254 1705 MobiDBLite consensus disorder prediction 262 335 - -
Trre13g03254 1705 MobiDBLite consensus disorder prediction 1272 1289 - -
Trre13g03254 1705 MobiDBLite consensus disorder prediction 1119 1162 - -
Trre13g03254 1705 MobiDBLite consensus disorder prediction 153 180 - -
Trre13g03254 1705 MobiDBLite consensus disorder prediction 597 642 - -
Trre13g03254 1705 MobiDBLite consensus disorder prediction 153 224 - -
Trre13g03254 1705 MobiDBLite consensus disorder prediction 597 623 - -
Trre13g03254 1705 MobiDBLite consensus disorder prediction 785 819 - -
Trre13g03254 1705 MobiDBLite consensus disorder prediction 1580 1611 - -
Trre13g03254 1705 SMART CaM_binding_2 1592 1705 IPR012417 GO:0005516
Trre13g03254 1705 SMART CaM_binding_2 797 913 IPR012417 GO:0005516
Trre13g03254 1705 SMART CaM_binding_2 1146 1263 IPR012417 GO:0005516
Trre13g03254 1705 SMART CaM_binding_2 478 594 IPR012417 GO:0005516
Trre13g03254 1705 MobiDBLite consensus disorder prediction 1 62 - -
Trre13g03254 1705 MobiDBLite consensus disorder prediction 119 140 - -
Trre13g03254 1705 MobiDBLite consensus disorder prediction 1587 1604 - -
Trre13g03254 1705 MobiDBLite consensus disorder prediction 33 49 - -
Trre13g03254 1705 MobiDBLite consensus disorder prediction 313 328 - -
Trre13g03254 1705 MobiDBLite consensus disorder prediction 1063 1079 - -
Trre13g03254 1705 MobiDBLite consensus disorder prediction 1490 1509 - -
Trre13g03254 1705 Pfam Plant calmodulin-binding domain 1162 1261 IPR012417 GO:0005516
Trre13g03254 1705 Pfam Plant calmodulin-binding domain 1602 1703 IPR012417 GO:0005516
Trre13g03254 1705 Pfam Plant calmodulin-binding domain 492 592 IPR012417 GO:0005516
Trre13g03254 1705 Pfam Plant calmodulin-binding domain 811 911 IPR012417 GO:0005516
Trre13g03254 1705 MobiDBLite consensus disorder prediction 278 305 - -
Trre13g03254 1705 MobiDBLite consensus disorder prediction 797 812 - -
Trre13g03254 1705 PANTHER CALMODULIN-BINDING PROTEIN-RELATED 300 595 IPR044681 GO:0005516
Trre13g03254 1705 MobiDBLite consensus disorder prediction 1054 1098 - -
Trre13g03254 1705 MobiDBLite consensus disorder prediction 197 224 - -
Trre13g03254 1705 MobiDBLite consensus disorder prediction 1490 1523 - -
Trre13g03254 1705 MobiDBLite consensus disorder prediction 454 476 - -
Trre13g03254 1705 MobiDBLite consensus disorder prediction 1268 1301 - -
Trre13g03254 1705 MobiDBLite consensus disorder prediction 119 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03254 Trre-Chr13 39547805 39553566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03254 502 952 Calmodulin-binding Proteins AT5G04020 32.996 6.57e-50 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03254 - - tpra:123892280 2711.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03254 13 39547805 39553566 Trre13g03254 13 39547805 39553566 ECH