Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03240 ATGGTTGCATTTTGTTCTCCTCAATTCTCATACTCAAACATGGGATGGTTCTTAGAAGAGTTAGAGCCAGTTTCCTTAATAATTAGCCATAACCAAAAAAATTATGTATCATTAGAATACTCTTTACCGCAAAATGAATTCACTTCACCAAATAAGCAACATGTTGAGAATATTGAAAGGTCATCATCCCCTAAACTTATGGTGAAGAAGCTTAATCACAATGCTAGTGAACGTGATCGCCGAAAGAAAGTCAATAGCTTAATTTCTTCACTACGTTCACTTCTTCCAGGTGAAGATCAAACGAAAAAAATGAGCATTCCAGTAACAATTTCAAGAGTATTAAAATACATACCGGAATTACAAAAGCAAGTGGAAGGATTAATTAAGAAAAAAGAAGAGTTTCTATCAAGAATTTCTAGACAAGAATATGCAGTGAACAAAGAATCATCAGAAAGGAAAATTCCAATTTACAATTCTTCTTTTATAGTTTCAACAAGTAGGCTTAATGATAGTGAGCTAGCTATTCATATTTCATCATATGAAGCCAACAAAATTCCACTATCTGAGATCTTGATGTGTTTAGAAGATAATGGACTATTTCTACTAAATTCTTCATCTTCCAAAACTTTTGGAGGGAGACTCTTCTATAACTTGCATTTTCAGGTGGAGAAAACTCAAAAATTAGAGTGTGATGTTCTAATTCAGAAGCTTTTGTCGATATGTGAGAAACAACGAATAAATCAATATTGA 750 0.3253 MVAFCSPQFSYSNMGWFLEELEPVSLIISHNQKNYVSLEYSLPQNEFTSPNKQHVENIERSSSPKLMVKKLNHNASERDRRKKVNSLISSLRSLLPGEDQTKKMSIPVTISRVLKYIPELQKQVEGLIKKKEEFLSRISRQEYAVNKESSERKIPIYNSSFIVSTSRLNDSELAIHISSYEANKIPLSEILMCLEDNGLFLLNSSSSKTFGGRLFYNLHFQVEKTQKLECDVLIQKLLSICEKQRINQY 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03240 249 Pfam Helix-loop-helix DNA-binding domain 69 121 IPR011598 GO:0046983
Trre13g03240 249 SMART finulus 74 126 IPR011598 GO:0046983
Trre13g03240 249 Gene3D - 59 151 IPR036638 GO:0046983
Trre13g03240 249 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 68 120 IPR011598 GO:0046983
Trre13g03240 249 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 139 IPR036638 GO:0046983
Trre13g03240 249 FunFam Transcription factor ORG2 64 149 - -
Trre13g03240 249 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 61 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03240 Trre-Chr13 39324717 39327232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03240 13 243 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 43.162 6.98e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre13g03240 HLH 4.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03240 - - psat:127129084 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03240 13 39324717 39327232 Trre13g03240 13 39324717 39327232 ECH