Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03233 ATGACTTCTCTCTACTTATGGTTTTATTATATCACAATCCTTCACTTTACATTTGCATTGGCTCACTCTGATAACTATATCATTCACATGAATTTATCAGCTATGCCAAAAGCATTCTTAAACCAACATAGTTGGTATGAATCTTCTCTTTCTCAAAACATGAAGCTGTCAAAACCCCCTGGTTACATTTCATCAATACCAGATTTACCCTTGAAGCTTCACACAACACACTCACCTCAATTCCTTGGTCTTAATCCCTACAAAGGAGCATGGCCAACCTCTAATTTTGGCAAAGATGTCATTGTTGGTGTGATTGACACTGGTATTTGGCCAGAAAGTGAAAGTTTCAATGATAAAGGAATGACTGAAATTCCTTCAAAATGGAAAGGCCAATTATGTCAATTTAAAAATACCAACAATTCATCTTTGTGCAACAAGAAACTCATTGGAGCTAGGTACTTTAATAAAGGATTCTTGGCGAAATATTCAAACCTTAGTAGAACAACTGTTAACACAACACGTGACAAATTCGGTCATGGGACCCACGTTTCATCAACAGCAGCGGGAAGCATAGTAGATGGTGCATCTTACTTTGGTTTAGCAAATGGAACAGCAATGGGGATAGCTTCATTGTCTCGACTAGCCATCTCTGACAATGTGCCTTTGTATGAAGATGGTATTGCTATAGGATCATTTGCAGCTATGGAAAAAGGTATTTTTGTGTCTACTTCAGCAGGTAATGATGGACCTTCCGTTAGAACTATAACCAATGAAATGCCGTGGGTGACAACTGTTGATGCTGGTACTATAGATCGCAAATTTCATGGAAATATTACACTTGGTAATGGAATCTCACTCACTGGCATCGCTTGTTATCATGGTAAATTCCCCACTACCAAGTTTCCAATTGCTTTCATGGGTATGTGTGACAATGTTAAAGAACTAATCAAAGTGAATAGTAAGATTGTGGTTTGTGAAGTTAAGAATGGAACACTTGATAATCTTCTTAAACCAGCTAAGAATTTGTATAAAGCAAAAGTTGTTGGAAGTGTTCTCATAACATACACATTACAACAAATTGATGAATTTATGTTTTTAAGTTTTCTCCCATTCCCAACTATCATTATTAACCAAAAAAATGGAGAAATTGTCAAAGATTTCATCAAGAGAACCTCTTACTCAAGTTCAATAGCAAAAATGTCTTTTAAGATAACATCTTTTGACGTTAAACCAGCGCCTAGTGTGGATTATTATAGTTCAAGAAGGCCTTCCAAGAGTTGTCCATATGTTTTGAAACCCGATATTACAGGTCCTGGTACATCAATCTTAGCAGCATGGCCCACAAATCTTCCCGTGGCTGATGTTGTATCTTATAATAAGTTTAATATTTTAAGTGGAACATCTATGGCGTGCCCTCATATTGCTGGTGTCGCAGCGCTTTTAAAAGGCGCACATGGTGATTGGAGCCCTGCCGCTATTCGATCGGCAATAATGACAACATCAGACATATTTGATAATACTAAGGAACACATCAAAGACATTGGAACAGGTAACAAAGCAACACCTCTTGCATTGGGAGCTGGTCATGTTAATCCTAATAGAGCACTTGACCCTGGTCTTGTTTATGATGTTGGTGTACAAGATTATGTTAATCTTCTTTGTGCACTTAACTACACACAAAAACACATCACTGCCATTACAAGATCATCTCTTAATGATTGCTCTAAACCTTCATTAGATCTCAATTATCCTTCTTTCATTGCTTTTTTCAATGCTGGAAATTCTTCAAAGACAACACAACATTTTCATAGAACAGTTACCAATGTTGGTGAAGGACAAACAACTTATATTGCTAATGTTACACCAATTAAGAGTTTTCGTATCAGCGTTATTCCAAATAAGTTGGTGTTCAAGAAGAAGAATGAGAAGATAAGCTACAGGTTGAGCATTGAAGGTCCAAGAATTATACAAAAGAATAAATTGTCTTTTGGATATCTTGCTTGGAAGGATGAGAAACATGTAGTCAGGAGTCCTATTGTTGTAACCACCCCCAATTTCAATTTGTAG 2067 0.3677 MTSLYLWFYYITILHFTFALAHSDNYIIHMNLSAMPKAFLNQHSWYESSLSQNMKLSKPPGYISSIPDLPLKLHTTHSPQFLGLNPYKGAWPTSNFGKDVIVGVIDTGIWPESESFNDKGMTEIPSKWKGQLCQFKNTNNSSLCNKKLIGARYFNKGFLAKYSNLSRTTVNTTRDKFGHGTHVSSTAAGSIVDGASYFGLANGTAMGIASLSRLAISDNVPLYEDGIAIGSFAAMEKGIFVSTSAGNDGPSVRTITNEMPWVTTVDAGTIDRKFHGNITLGNGISLTGIACYHGKFPTTKFPIAFMGMCDNVKELIKVNSKIVVCEVKNGTLDNLLKPAKNLYKAKVVGSVLITYTLQQIDEFMFLSFLPFPTIIINQKNGEIVKDFIKRTSYSSSIAKMSFKITSFDVKPAPSVDYYSSRRPSKSCPYVLKPDITGPGTSILAAWPTNLPVADVVSYNKFNILSGTSMACPHIAGVAALLKGAHGDWSPAAIRSAIMTTSDIFDNTKEHIKDIGTGNKATPLALGAGHVNPNRALDPGLVYDVGVQDYVNLLCALNYTQKHITAITRSSLNDCSKPSLDLNYPSFIAFFNAGNSSKTTQHFHRTVTNVGEGQTTYIANVTPIKSFRISVIPNKLVFKKKNEKISYRLSIEGPRIIQKNKLSFGYLAWKDEKHVVRSPIVVTTPNFNL 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03233 688 CDD Peptidases_S8_3 71 502 IPR034197 -
Trre13g03233 688 Gene3D - 553 684 - -
Trre13g03233 688 Pfam Fibronectin type-III domain 580 681 IPR041469 -
Trre13g03233 688 ProSitePatterns Serine proteases, subtilase family, serine active site. 466 476 IPR023828 -
Trre13g03233 688 PRINTS Subtilisin serine protease family (S8) signature 465 481 IPR015500 -
Trre13g03233 688 PRINTS Subtilisin serine protease family (S8) signature 97 116 IPR015500 -
Trre13g03233 688 PRINTS Subtilisin serine protease family (S8) signature 175 188 IPR015500 -
Trre13g03233 688 ProSitePatterns Serine proteases, subtilase family, histidine active site. 179 189 IPR022398 -
Trre13g03233 688 Pfam Subtilase family 97 507 IPR000209 GO:0006508|GO:0008236
Trre13g03233 688 ProSiteProfiles Serine proteases, subtilase domain profile. 70 536 - -
Trre13g03233 688 SUPERFAMILY Subtilisin-like 73 540 IPR036852 GO:0004252|GO:0006508
Trre13g03233 688 Gene3D Peptidase S8/S53 domain 99 216 IPR036852 GO:0004252|GO:0006508
Trre13g03233 688 Gene3D - 271 407 - -
Trre13g03233 688 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 221 681 IPR045051 -
Trre13g03233 688 Gene3D Peptidase S8/S53 domain 220 549 IPR036852 GO:0004252|GO:0006508
Trre13g03233 688 CDD PA_subtilisin_like 277 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03233 Trre-Chr13 39204617 39206891 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03233 11 673 Subtilisin-like Serine Gene Family AT5G67090 40.428 1.25e-174 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03233 - - gmx:100786751 822.002