Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03225 ATGGGGTTGGCTGCAGAGTCACAGTTTCATGTTTTGGCTGTTGATGATAGCATCATAGATAGGAAACTTATTGAAAGGCTTCTCAAAACCTCTTCATATCAAGTTACTACAGTTGATTCTGGTAGCAAGGCTTTAGAGTTTTTGGGTCTATGTGAGAATGATGAGACCAACACAAATACACCATCTGTCTTTCCTAGCAATCATCAGGAAGTGGAAGTGAATCTTGTTATAACAGATTACTGTATGCCTGGCATGACAGGCTATGATTTGCTTAAGAAAATCAAGGAATCATCATCATTGAAAAACATACCAGTTGTTATTATGTCATCTGAGAATGTACCTTCAAGGATCAATAGATGTTTAGAGGAAGGAGCAGAAGAATTTTTCTTGAAACCTGTAAGGCTATCAGATTTGAGTAGACTTAAACCTCACATGAAGAAAACTAAATTGAAAGATCAAAATCAAGAAACAGAACAAAAATTTGAAAACTCAGAAATTCTTCAAAATGAGCAAAAACAAGCATCAAAAGTTCAATTTCAACATTCAGAGACAGAATCACAACCACAGACACAGTTACAAGCACATTCAAATATTGATCAACAGCAACAATCACTACAACAAGGGAACAATAACAAGAGAAAGAATATGGAACAACAAGGTCTTTCATCTGAGACTGATAGAACAAGACCAAGATACAGTGGCATAGCTACGGTTGTATGA 720 0.3583 MGLAAESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLCENDETNTNTPSVFPSNHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLKNIPVVIMSSENVPSRINRCLEEGAEEFFLKPVRLSDLSRLKPHMKKTKLKDQNQETEQKFENSEILQNEQKQASKVQFQHSETESQPQTQLQAHSNIDQQQQSLQQGNNNKRKNMEQQGLSSETDRTRPRYSGIATVV 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03225 239 SMART REC_2 9 142 IPR001789 GO:0000160
Trre13g03225 239 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 222 IPR045279 GO:0009736
Trre13g03225 239 CDD REC_typeA_ARR 11 141 - -
Trre13g03225 239 MobiDBLite consensus disorder prediction 169 239 - -
Trre13g03225 239 ProSiteProfiles Response regulatory domain profile. 10 146 IPR001789 GO:0000160
Trre13g03225 239 MobiDBLite consensus disorder prediction 145 164 - -
Trre13g03225 239 Pfam Response regulator receiver domain 11 138 IPR001789 GO:0000160
Trre13g03225 239 MobiDBLite consensus disorder prediction 169 230 - -
Trre13g03225 239 Coils Coil 147 170 - -
Trre13g03225 239 Gene3D - 10 230 - -
Trre13g03225 239 SUPERFAMILY CheY-like 8 153 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03225 Trre-Chr13 39121601 39123529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03225 1 239 Response Regulator Gene Family AT3G57040 62.097 1.49e-96 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre13g03225 Response_reg 6.9e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03225 K14492 - gmx:100814494 348.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03225 13 39121601 39123529 Trre13g03225 13 39121601 39123529 ECH