Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03222 ATGCATCCTGGACTCATGGTTTTGAAAACTCATCGCGCTCATCTCACAGATCGCGTTCATCCTCTCACTCTTTTAATTTTTCGGAAAAAAAAAGAAGCTTTCATAGTAGAGTTAGTGAGGCTTCATCAGAACACTGAGTTGGGAAGGAGGTTTCCTGTTTATGATGGTGGAAAGAATCTTTACACTGCCGGTTCGCTTCCTTTTACACACAAGGAGTTCAATATAGTATTGAATGAGGATGATGAAGGTGCTAGCAATACAAGCTATGTATCACTTGGGAGGTTACTCTATTCTCTTGGGAGTAGAATGTCCGATTTACTTCGGCTTCTAATTTGTTGTGGTGTAGAGGAGTGTTATTTATATCCTCCGACCCTGACTTTGCCATCATTGGCATTTATAGAACCGCTCCCTTTGATTGACACTGTAGCTCAAATTTTAGGAAAAGATGTGTACTCAAAGCCAATTACAGATGCAGACCGCGTCAAGATTAAGAAAGCCTTAAAAGAAATGATTTTCGCTTTTCCTCCTAACCGTTTCCCTCTGGATGAGAAAATGAACATGCAATCAATAGTTGATTACTTTCAAGAAATGTATAGATATACAATCATGCGTCCTCATTTACCTTGCATTCAAGTTGGAAGCGAAAAGAAGACGAACTATTTGCCTATGGAGGAGTTTGGTATCAGTGCAGACAACAAGCTTGCATCAGTTGAGGCTGAAGTTGTTCCTGCTCCATGGACCTAG 744 0.4046 MHPGLMVLKTHRAHLTDRVHPLTLLIFRKKKEAFIVELVRLHQNTELGRRFPVYDGGKNLYTAGSLPFTHKEFNIVLNEDDEGASNTSYVSLGRLLYSLGSRMSDLLRLLICCGVEECYLYPPTLTLPSLAFIEPLPLIDTVAQILGKDVYSKPITDADRVKIKKALKEMIFAFPPNRFPLDEKMNMQSIVDYFQEMYRYTIMRPHLPCIQVGSEKKTNYLPMEEFGISADNKLASVEAEVVPAPWT 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03222 247 Gene3D paz domain 173 232 - -
Trre13g03222 247 Pfam PAZ domain 145 225 IPR003100 GO:0005515
Trre13g03222 247 CDD PAZ_argonaute_like 135 224 - -
Trre13g03222 247 SUPERFAMILY PAZ domain 131 229 IPR036085 GO:0005515
Trre13g03222 247 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 131 224 - -
Trre13g03222 247 ProSiteProfiles PAZ domain profile. 175 230 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03222 Trre-Chr13 39068730 39073765 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03222 33 86 Eukaryotic Initiation Factors Gene Family AT5G43810 57.407 2.07e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03222 K11593 - gmx:100798086 201.06