Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03219 ATGCCAATGCAACAATCAATCAAGCATGTTTCTCCCAAAACATTGCTTCCAAATTCGACGATTTTTCCTCCGACGTTGACCATCGATCTCGTTGTCATGGTACATGGAATGAAGGGAAGTTTAGTCTTGTATGAATTCATTGAAAATGGAAGTCTTCATGATATTTTGAATGAAAAGAATCCCCCACCACCCTTAACCTGGAATGTCAGGTTTAACATAGCTGTCAGAATTGCTGAAGGACTCGCATATCTGCATAATTGTGACTCATCCATAGTGCATCGAGACATTAAACCAAAACATATTCTTATTGATGACAATATGGAGCCAATTATAGCTGATTTTGGTACTGCACTATATAGGAATTGTATGAAGATTTATGTAGTCATTCAGAAACTAGGAAAATGCGTTGGTACCCCTGGCTATATTGAACCAAAGAATGCATATCTAATAGTGCAGAGTAGAAAGTCTAATGTATATAGCTACGGCGTAGTTTTACTCGAGATAATAACCAGAAAGAAAGTGGTAATTCCCTGTTTATATGATGAGACAATGTGA 555 0.3712 MPMQQSIKHVSPKTLLPNSTIFPPTLTIDLVVMVHGMKGSLVLYEFIENGSLHDILNEKNPPPPLTWNVRFNIAVRIAEGLAYLHNCDSSIVHRDIKPKHILIDDNMEPIIADFGTALYRNCMKIYVVIQKLGKCVGTPGYIEPKNAYLIVQSRKSNVYSYGVVLLEIITRKKVVIPCLYDETM 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03219 184 SUPERFAMILY Protein kinase-like (PK-like) 41 175 IPR011009 -
Trre13g03219 184 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 29 175 - -
Trre13g03219 184 ProSiteProfiles Protein kinase domain profile. 1 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g03219 184 Pfam Protein kinase domain 36 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g03219 184 Gene3D Transferase(Phosphotransferase) domain 1 28 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03219 Trre-Chr13 39032531 39036246 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03219 41 175 Receptor kinase-like Gene Family AT1G17750 49.635 7.42e-37 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre13g03219 Pkinase 2.6e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03219 - - tpra:123922286 217.624