Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03209 ATGGTCGTCAATAGATTGAAGAGGGAACAATGTGACCGAACAAAGCATGATTCTAGCTTCTCCCGCTGGAAGATTCTTATTGGTCCTTCTGATTGGGAAGACCATTCCAAAGGAAAGGAAGGATCTGCCAGATACAGGATTCACAACCTTCCTCAGAAATTGGGTCCGGGAGTGTACGAGCTTGGAGTAGCTGTGTCGTATAGTGGTTTGGGGCGTGAAATTTACAAGCTTACTACTGACCCTCGCTACGTAGTTGTGGTTTACCTTGGAAAAGCTGACAATGTGAGAGCAAGACTCCAGCGTTATGGAAGGACTGGAGCTCATTTGAGTAATAGTTGTTCATCGGATGATTCATCTCTTCAAACGGGAAGGACATTGTTTCAGGAGATATTTTCGCAAGGTTTCCCAATTGTTTATAGATGGGCTCCTATGCAAAATGAGAGAGATGCCCTGAGAACAGAAGCTCAGCTGCTTAGTACATTTGATTATGCATGGAACACAATCGGTAATGGTACACGGCGGCCTGATGATATTCTTCAAATGCTCAACAAACTTGCTTCAGGCACCAGATCATTTTCAGATGTGACCATATTGTTTCTTCCCTTCACTCAGAGGAAAGTGGGGATACCAATTAAATCATGCAAATTGCCTTTGACAGATGACAAATTAGATGAAGCTGACAATGGTAGCTATAATATCCTATCCCGTGTGTTCAAATTCAACAGGTCGCGTCCTAGGATAGTTCAGGATACCACTAGTAGGGCCATTCATGAGAATGCAAAAATTTGCGGAGTAATATTGGCTGACGGTTCTATTTGTCAGAGGCCACCGGTTGAAAAAAGAGTGAGGTGTGCTGAACACAAAGGAATGAGAGTAAAGGTGTCCACTGCCAAAGCAATCAGAGCACCCAAGTTAGAATTAGAAACTACTGTAGGTAATGCCTATAGGTACCGAAATGTTAGCGAAGATGTAGAAGAGCCTCCAAAAAGAAAGGTTGAGAGACATGTTCAGGAGAGTTTCACCAAAACCATTATATGTGGAGTCATCTTGGATGATGGATCTACTTGTACAAGACAACCAGTTAAAGGAAGAAAAAGGTGCCATGAGCATAAAGGGAAGAGAATCCGTGGAAATCAGAAATAA 1143 0.4269 MVVNRLKREQCDRTKHDSSFSRWKILIGPSDWEDHSKGKEGSARYRIHNLPQKLGPGVYELGVAVSYSGLGREIYKLTTDPRYVVVVYLGKADNVRARLQRYGRTGAHLSNSCSSDDSSLQTGRTLFQEIFSQGFPIVYRWAPMQNERDALRTEAQLLSTFDYAWNTIGNGTRRPDDILQMLNKLASGTRSFSDVTILFLPFTQRKVGIPIKSCKLPLTDDKLDEADNGSYNILSRVFKFNRSRPRIVQDTTSRAIHENAKICGVILADGSICQRPPVEKRVRCAEHKGMRVKVSTAKAIRAPKLELETTVGNAYRYRNVSEDVEEPPKRKVERHVQESFTKTIICGVILDDGSTCTRQPVKGRKRCHEHKGKRIRGNQK 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03209 380 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 328 378 IPR038909 GO:0003677|GO:0006355
Trre13g03209 380 Pfam GIY-YIG domain-containing protein 20 179 - -
Trre13g03209 380 SMART uri_9 74 171 IPR000305 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03209 Trre-Chr13 38944369 38947615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03209 1 375 HRT Transcription Factor Family AT5G56780 42.487 2.61e-90 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HRT Trre13g03209 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03209 - - lang:109350609 471.47