Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03198 ATGTCCCTTGAAGACTCACTAAGATCTCTTTCTTTAGATTACTTGAATCTTCTAATCAACGGACAAGCCTTCAGCGACGTCGTTTTCAGCGTCGAAGGCCGATTAGTTCATGCTCATAGATGCATCTTAGCTGCAAGAAGTTTATTCTTCAGAAAATTCTTTTGTGGGCCAGACCCACCTTCTGGACTTGACCCATCAGGAAACCGAGTTAACTCATCATCATCAACACGTTCTGGTGTTATTCCTGTTAACTCAGTTGGTTATGAAGTTTTCTTGTTGATGCTTCAGTTTCTTTATAGTGGACAAGTTTCTATTGTTCCTCAGAAACATGAACCTAGGCCTAATTGTGGTGACCGTGGTTGTTGGCATACACATTGTACCTCAGCCGTTGATCTTGCTCTTGATACTCTTGCTGCCGCTAGATATTTTGGTGTTGAACAGCTCGCATTGCTTACTCAGAAACAACTAGCGAGCATGGTGGAAAAAGCCTCCATTGAAGATGTAATGAAAGTGCTACTAGCATCAAGAAAACAAGACATGCACCAACTATGGACCACATGTTCCCACCTCGTAGCAAAGTCAGGTCTTCCACCGGAAGTTCTAGCAAAACACCTCCCTATTGACATCATAGCCAAAATCGAAGAGCTTCGAATCAAATCATCCTTATCACGCCGCTCCTTAATCCCTCACCACCATCATCACCCTCACCACCATGACCATCTCACCGCAGCAGCCGACCTAGAAGACCAAAAAATCCGTCGAATGAGGCGTGCCCTCGACTCCTCAGACGTGGAACTAGTTAAACTCATGGTAATGGGAGAAGGTCTTAACCTCGACGAAGCATTAGCATTACCTTATGCTGTTGAGAATTGTAGCAGAGAAGTTGTGAAAGCCTTATTGGAACTCGGTGCAGCCGATGTTAACTTCCCTGCTGGTCCAACCGGTAAAACTCCGCTTCACCTTGCAGCCGAGATGGTCTCACCAGACATGGTGGCAGTATTACTCGACCACCACGCCGACCCTAATGTAAGAACGGTGGACGGTGTTACGCCTTTGGACATTTTGAGAACCCTAACTTCAGATTTTCTTTTCAAAGGTGCTGTCCCTGGATTAACTCACATAGAACCAAACAAACTAAGGTTGTGTTTGGAACTTGTTCAATCTGCTGCACTTGTTATGTCAAGGGAAGAAGGGAATAATAATGCTAACAATACATCTTCTTCCGCAACAAACATGTATCCTCATAATATGAATGAAGATCATCACCATAGCCACAGCAGCAACAATAACATGGTGTATCTTAACCTTGGTGCTACTCAAATGAATTCAAGGTTGGATTCTGGTGATGATGATAGCAATCATAATAGTCAAAGGGAAACTATCAACCACTCCATGTATCATCATCACCATCATTCTCATGACTACTAA 1428 0.4363 MSLEDSLRSLSLDYLNLLINGQAFSDVVFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPSGNRVNSSSSTRSGVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEPRPNCGDRGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIEDVMKVLLASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIDIIAKIEELRIKSSLSRRSLIPHHHHHPHHHDHLTAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALPYAVENCSREVVKALLELGAADVNFPAGPTGKTPLHLAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVMSREEGNNNANNTSSSATNMYPHNMNEDHHHSHSSNNNMVYLNLGATQMNSRLDSGDDDSNHNSQRETINHSMYHHHHHSHDY 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03198 475 MobiDBLite consensus disorder prediction 447 463 - -
Trre13g03198 475 CDD BTB_POZ_NPR_plant 8 160 - -
Trre13g03198 475 SUPERFAMILY Ankyrin repeat 273 357 IPR036770 -
Trre13g03198 475 SMART ANK_2a 279 309 IPR002110 GO:0005515
Trre13g03198 475 SMART ANK_2a 314 343 IPR002110 GO:0005515
Trre13g03198 475 MobiDBLite consensus disorder prediction 397 429 - -
Trre13g03198 475 SUPERFAMILY POZ domain 8 158 IPR011333 -
Trre13g03198 475 Gene3D - 239 362 IPR036770 -
Trre13g03198 475 Gene3D Potassium Channel Kv1.1; Chain A 4 193 IPR011333 -
Trre13g03198 475 Pfam Ankyrin repeats (3 copies) 262 344 IPR002110 GO:0005515
Trre13g03198 475 Pfam BTB/POZ domain 16 110 IPR000210 GO:0005515
Trre13g03198 475 MobiDBLite consensus disorder prediction 441 475 - -
Trre13g03198 475 SMART BTB_4 25 160 IPR000210 GO:0005515
Trre13g03198 475 FunFam regulatory protein NPR5 isoform X2 245 362 - -
Trre13g03198 475 Pfam Domain of unknown function (DUF3420) 195 256 IPR024228 -
Trre13g03198 475 MobiDBLite consensus disorder prediction 397 415 - -
Trre13g03198 475 ProSiteProfiles Ankyrin repeat profile. 314 346 IPR002110 GO:0005515
Trre13g03198 475 ProSiteProfiles Ankyrin repeat region circular profile. 314 344 - -
Trre13g03198 475 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 470 IPR044284 GO:0099402
Trre13g03198 475 FunFam regulatory protein NPR5 isoform X1 4 193 - -
Trre13g03198 475 ProSiteProfiles BTB domain profile. 25 107 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03198 Trre-Chr13 38779031 38782036 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trre13g03198 BTB 9e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03198 K14508 - pvy:116132798 697.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03198 13 38779031 38782036 Trre13g03198 13 38779031 38782036 ECH