Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03176 ATGGCCAACGACAACAACAAGACCAAAGAAAAAGAGAATGATTTTTTCGTAGACGCTAATGAAGATGAAACTGATATCGAAGCTGTTAACTACGACAGTGACAATGATAATGATGATGAAGATTATGATCGCAATGAAACAGAACAACCTGAATCTTTCACTTCTCATCAATGGCCTCAAAGTTACAATGAGGCTATTGATCCTTTGACAATTGCTGCTGCACCAAATCTTGGATCAATATTCAAAGCACCAAGTGTTATTTATTCAAGCTTTGTAAATCTTGGATCAAGGAGTAACTTAGACTTACATGATGGAAAGACCCCTTTTTTATCTGGTGCTCAAATTGCAGAAGGGGTTCCTAGACAATCAACATGGTGGGAGAAAGCTTCCATTCAAATGCATTTTCCTGAAGAATTGCCTATTGGTTATGGCTGTACCTTCACTCAAACTATATTTAATGGGATTAATGTGATGGCTGGAGTTGGGCTTCTATCTACACCCGATACTATAAAGCAAGCTGGGTGGGCGAGTATGTTGGTGATGGTTATTTTCGCAGTTGTATGTTGTTATACAGCAGAGCTTATGAGACATTGTTTTCAAAACAGAGAAGGCATTGTTAGCTACCCAGATATAGGAGAAGCTGCATTTGGAAAATATGGCCGAGTTATTATATCAATAATTTTGTACACTGAATTATATTCATATTGTGTGGAATATATCATCATGGAAGGCGATAACCTTTCTGGTCTGTTTCCTGGAACATCCTTGAATTGGGGAAGTTTCAGTTTGGATGACAAGCACTTATTTTCAATTCTGACTGCACTTATTATTCTCCCTACTGTTTGGTTGAAGGATCTTCGTATAATCTCCTATCTCTCAGCTGGAGGGGTTATTGCTACAACTTTGATTGGTATGTGTGTGTTTGTTGTTGGGACAAGAAAGGATGTTGGATTCCATCAAACTGGTCCATTTGTGAAATGGAGTGGCATTCCATTTGCTTTCGGTATCTATGGATTTTGCTTTGCAGGACATTCAGTTTTTCCCAATATTTATCAATCTATGGCCAACAAAAAAGAATTTACCAAGGCAATGATTATATGTTTTGTTTTGCCCATGTTGTTATATGGAAGCGTCGGAATCGCAGGATTTCTCATGTTTGGTGAAGGGACTTTGTCTCAGATAACATTGAATCTACCACGAGATGCATTCGCTACCAAATTCTCCATGTGGACTATAGCAATTCTACCGCTAACTAAATATCCTTTTCTGTCGTAA 1275 0.3812 MANDNNKTKEKENDFFVDANEDETDIEAVNYDSDNDNDDEDYDRNETEQPESFTSHQWPQSYNEAIDPLTIAAAPNLGSIFKAPSVIYSSFVNLGSRSNLDLHDGKTPFLSGAQIAEGVPRQSTWWEKASIQMHFPEELPIGYGCTFTQTIFNGINVMAGVGLLSTPDTIKQAGWASMLVMVIFAVVCCYTAELMRHCFQNREGIVSYPDIGEAAFGKYGRVIISIILYTELYSYCVEYIIMEGDNLSGLFPGTSLNWGSFSLDDKHLFSILTALIILPTVWLKDLRIISYLSAGGVIATTLIGMCVFVVGTRKDVGFHQTGPFVKWSGIPFAFGIYGFCFAGHSVFPNIYQSMANKKEFTKAMIICFVLPMLLYGSVGIAGFLMFGEGTLSQITLNLPRDAFATKFSMWTIAILPLTKYPFLS 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03176 424 Pfam Transmembrane amino acid transporter protein 146 422 IPR013057 -
Trre13g03176 424 Gene3D Amino acid/polyamine transporter I 144 418 - -
Trre13g03176 424 MobiDBLite consensus disorder prediction 17 46 - -
Trre13g03176 424 PANTHER OS05G0424000 PROTEIN-RELATED 150 407 - -
Trre13g03176 424 MobiDBLite consensus disorder prediction 1 59 - -
Trre13g03176 424 MobiDBLite consensus disorder prediction 1 16 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03176 Trre-Chr13 38320163 38323411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03176 3 423 Amino Acid or Auxin Permease AAAP Family AT2G41190 57.373 1.14e-170 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03176 K15015 - gmx:100790344 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03176 13 38320163 38323411 Trre13g03176 13 38320163 38323411 ECH